Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2210 114 5e-20 seq1840 104 9e-17 seq1994 89.7 2e-12 seq475 89.7 2e-12 >seq2210 Length=20483 Score = 114 bits (126), Expect = 5e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 391062 GTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAA 391121 ||||| || || || || || || ||||| || || |||||||| || || | ||| || Sbjct 17566 GTTAAGACTCTCACGGGAAAGACCATTACCCTCGAGGTTGAATCTTCCGACACCATCGAC 17625 Query 391122 GCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATT 391181 | ||| || |||||||| |||||||| || ||||| |||||||||||||| || Sbjct 17626 AACGTCAAATCGAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAACAACGTTTGATC 17685 Query 391182 TTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGAT 391241 ||| | || |||||||| || ||||| | || | | ||||| || || | ||||| Sbjct 17686 TTCGCCGGCAAACAACTCGAGGATGGCCGTACACTCTCCGATTACAACATCCAGAAGGAG 17745 Query 391242 GCAACACTTCACTTAGTATTAAGACT 391267 | || |||||||| || | ||||| Sbjct 17746 TCTACCCTTCACTTGGTCCTCAGACT 17771 Score = 111 bits (122), Expect = 6e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 391074 ACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAA 391133 || || || || || |||||||| || ||||| |||| |||||| | | ||| Sbjct 17295 ACCGGAAAGACCATCACTCTTGAGGTCGAATCCAGCGATACCATTGACAATGTCAAATCC 17354 Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || || || || ||||| |||||||||||||| ||||| ||||| |||||| | || ||| Sbjct 17355 AAGATCCAGGACAAGGAGGGAATTCCTCCTGACCAACAGCGTTTGATTTTCGCCGGCAAA 17414 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 ||||| |||||||| | || ||| ||||| || || | ||||| | || || ||| Sbjct 17415 CAACTCGAAGATGGTCGCACCTTGAGCGATTACAACATCCAGAAGGAGTCTACTCTCCAC 17474 Query 391254 TTAGTATTAAGACT 391267 || || | ||||| Sbjct 17475 TTGGTCCTCAGACT 17488 Score = 105 bits (116), Expect = 3e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||| || || ||||| | || || ||||| || Sbjct 18010 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATTACATTGGAAGTAGAATCGTCA 18069 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | |||| || || || |||||||| || ||||| ||||||||| Sbjct 18070 GATACTATTGATAATGTTAAGTCGAAGATCCAGGATAAGGAGGGCATTCCACCTGATCAA 18129 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || || || |||| || || | || ||||| ||||| | ||||||| ||| Sbjct 18130 CAACGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGCAGAACCCTTTCGGATTACAAT 18189 Query 391230 ATTGATAAGGA 391240 ||| | ||||| Sbjct 18190 ATTCAAAAGGA 18200 Score = 87.8 bits (96), Expect = 7e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || ||||| || || || ||| | || ||||| ||||| Sbjct 17782 ATGCAAATCTTCGTCAAGACCCTCACTGGGAAGACAATCACTTTGGAGGTTGAGTCATCG 17841 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || || || ||||||||||| || || || ||||||||| Sbjct 17842 GACACCATCGACAATGTGAAGTCCAAGATCCAAGATAAGGAGGGTATCCCACCTGATCAA 17901 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || || | || || || | || ||||| | ||| | ||||||| || Sbjct 17902 CAACGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTTTCGGATTACAAC 17961 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 17962 ATCCAAAAGGA 17972 >seq1840 Length=35231 Score = 104 bits (114), Expect = 9e-17 Identities = 194/285 (68%), Gaps = 9/285 (3%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || |||| ||||||||||| ||||| ||| | ||||| ||||| ||||| |||| Sbjct 30865 ATGCCGTCGTTACCGTTCCCGCTTACTTCAACGATTCCCAACGTCAAGCTACTAAGGATG 30806 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || ||||| ||||| || ||||| || | | || || || || || || || | Sbjct 30805 CTGGTCAAATTGCCGGTTTGAACGTTCTCAGAGTCGTCAACGAGCCAACCGCTGCCGCCC 30746 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATT 451499 | || || || | ||| || | || || || | || || | |||| Sbjct 30745 TCGCTTACGG-TTTGGAGAAGGA--------TGAGGACAAGATCATCGCTGTTTACGATT 30695 Query 451500 TTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAA 451559 | |||||||| || |||| || || || || || | || || || ||||| | Sbjct 30694 TGGGTGGAGGTACCTTCGATATCTCCGTCCTCGAGATCCAAAAGGGTGTCTTCGAAGTTA 30635 Query 451560 AGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604 || | ||||| |||||||| || | |||||||||||| | |||| Sbjct 30634 AGTCTACCAACGGTGATACCCACTTGGGAGGTGAAGATTTCGATA 30590 >seq1994 Length=27662 Score = 89.7 bits (98), Expect = 2e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 391039 ATTATATTATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATG 391098 ||||||| ||| |||| ||||| || || || || || || || || || ||||| | Sbjct 4087 ATTATATGATAC--AATAGCTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGG 4030 Query 391099 TTGAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTC 391158 | || || || || | ||| || | | || || || || || ||||| ||||||| Sbjct 4029 TCGAGTCCTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTC 3970 Query 391159 CTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGG 391218 |||| |||||||||||||| || ||| | || || ||| | || || ||| | ||| | Sbjct 3969 CTCCCGATCAACAACGTTTGATCTTCGCTGGAAAGCAATTGGAGGACGGACGTACTCTCT 3910 Query 391219 CGGATTATAATATTGATAAGG 391239 | ||||| || || | |||| Sbjct 3909 CAGATTACAACATCCAAAAGG 3889 >seq475 Length=52298 Score = 89.7 bits (98), Expect = 2e-12 Identities = 275/422 (65%), Gaps = 10/422 (2%) Strand=Plus/Minus Query 451186 TCAAAAAGGA----AAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTG 451241 || ||||||| ||||| | | ||||| | || |||| | || || || || Sbjct 36944 TCCAAAAGGATGGCAAGCCTTCCGTACAAGTTGAATACCAAGGAGCAAAGAAGACCTTCA 36885 Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATA 451301 ||||||| || ||||| | ||| ||||| || ||||| || || ||| ||| Sbjct 36884 CTCCTGAGGAGATTTCCGCCATGATTCTTGGAAAGATGAAGGACGTCGCCGAATCATACC 36825 Query 451302 TTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAAC 451361 |||| | ||||| | ||||| ||||||| || || || ||||| || ||| Sbjct 36824 TTGGAAAGACTGTTACCCACGCAGTTGTTACTGTCCCAGCCTACTTCAACGACAACCAAA 36765 Query 451362 GGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 | ||||| || || ||||| || |||||| ||||| | || || || ||| | |||| Sbjct 36764 GACAAGCCACCAAGGATGCCGGTATTATTGCCGGTTTGGAAGTCCTCCGTATTGTCAATG 36705 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaa 451481 ||||||| || || ||| | || || || | ||| || | || ||| | ||| Sbjct 36704 AACCTACCGCCGCAGCTATTGCCTACGG-TTTGGACAA--GACTGAGGGTGAACGACAAA 36648 Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG 451541 ||| || | ||| ||||||||||||| ||| ||| | || || ||||| Sbjct 36647 TCATT---GTCTACGATCTTGGTGGAGGAACCTTCGATGTTTCCCTTCTCTCCATTGACC 36591 Query 451542 ATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTG 451601 ||| || ||||| || | || ||||| ||||| | ||||| |||||| | | Sbjct 36590 GTGGTGTGTTTGAGGTTCTTTCTACTGCCGGTGACACTCACTTGGGAGGAGAAGATTTCG 36531 Query 451602 AT 451603 || Sbjct 36530 AT 36529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975652482625232