Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2306 136 3e-26 seq1456 104 2e-16 seq338 91.5 1e-12 >seq2306 Length=17745 Score = 136 bits (150), Expect = 3e-26 Identities = 115/140 (82%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 668849 TTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCT 668908 ||||| ||||| ||||||||| || | ||||||||||||||||| |||||||| | ||| Sbjct 11777 TTAAG-GGTAAGGAAGGTCGTCTTCGTGGAAATTTGATGGGAAAGCGTGTCGACTTTTCT 11835 Query 668909 GCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTT 668968 || ||||| ||||||||| |||||||||| || ||||| |||| ||||||||||||| Sbjct 11836 GCTCGTACTGTTATTACTGGTGATCCCAATCTTTCTCTCGATGAGGTTGGTGTTCCTCGA 11895 Query 668969 ATTATTGCTAAAAATCTTAC 668988 | ||||| | || ||| || Sbjct 11896 AGCATTGCGAGAATTCTCAC 11915 >seq1456 Length=91500 Score = 104 bits (114), Expect = 2e-16 Identities = 245/368 (67%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 || || |||||||| | ||| || ||||| ||||||||||| || || | | |||||| Sbjct 53318 ATTCCGTTGGCATCAAGATCGAAAGTGACCTCAATTTGAGGAACACCACGTGGTGCAGGT 53377 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || | | || | |||| | || || || || ||| || || ||| Sbjct 53378 GGGATACCAGTGAGCTCGAACTTGCCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 53437 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 |||||||| | |||||| || ||| ||| || || || | || | ||| || Sbjct 53438 CCCTCGAAGACTTGGATGAGGACACCAGGTTGGTTGTCAGAGAAGGTAGAAAAGACCTCA 53497 Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 || || || || || || |||||||| || | |||||||| ||||| || Sbjct 53498 GACTTCTTGGTTGGGATAGTGGTGTTTCTTGGGATGAGCTTGGTCATCTGTCCACCAGCA 53557 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 517571 || || | ||| ||||| | || | |||||| | |||| || | || | | || Sbjct 53558 GTCTCGATACCGAGAGACAATGGCGCGACATCGAGAAGGAGGATCTCGTTGGTGGACTTG 53617 Query 517572 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 | | || | |||| ||||| || || || | |||||||||||||||||||| ||| Sbjct 53618 GAGGAGGTGTCACCAGAGAGAATGGCAGCCTGGACGGCAGCACCATATGCAACAGCCTCA 53677 Query 517631 TCAGGATT 517638 ||||| || Sbjct 53678 TCAGGGTT 53685 >seq338 Length=8655 Score = 91.5 bits (100), Expect = 1e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 366994 GTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATT 367053 ||||| || ||||| ||||||||||||||||| | || | | | || || |||| ||| Sbjct 2338 GTAGTTGCAACAATTGCATTTGGTATGGGTATCGACAAGCAGAACGTGCGATTTGTCATT 2279 Query 367054 CATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGT 367113 |||||| | |||||| | | | ||||||||||| || |||| ||| |||| ||||| Sbjct 2278 CATTATTGCCTTCCCAAAACTTTAGAAGGTTATTACCAGGAAACTGGGCGAGCTGGTCGA 2219 Query 367114 GATGG 367118 || || Sbjct 2218 GACGG 2214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780693180942424