Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1009 230 3e-55 seq2055 141 1e-28 >seq1009 Length=94825 Score = 230 bits (254), Expect = 3e-55 Identities = 1123/1751 (64%), Gaps = 57/1751 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| | ||| ||||||| || || | ||||| || || || ||||| || || | Sbjct 22537 CCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATCGAAAGTGCT 22596 Query 111672 TTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTT 111730 | || ||||| || |||||| ||| || | || || | ||||| ||||| Sbjct 22597 ATCGAAACATATAACTTGATGTCGAACAAGTACTTT-ACACATGCCTCCCCAACACTCTT 22655 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 | || ||||| ||| | | ||| | || || ||||| || | | |||||||| Sbjct 22656 CTCTGCGGGTACTCCACAAGCACAACTTTCATCGTGCTTCCTCATCGACATGAAGGAGGA 22715 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 | || |||| ||||||| |||| | | |||||| ||||||||| ||||| Sbjct 22716 TAGTATTGATGGTATTTACGACACTTTGAAGATCTGTGCCATGATCTCAAAGAATGCTGG 22775 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTATTAGAGGTACAA 111909 |||||| || | |||| || || | || | | || | || ||||| | Sbjct 22776 TGGTATTGGTCTCAACATTCACAGAATCCGTGCTA-CTGGTGCATACATCGCTGGTACCA 22834 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 |||| | || | |||||| |||| ||||| || || || ||| ||| || | |||| Sbjct 22835 ATGGAAACTCTAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACTGCCAGATATG 22894 Query 111970 TAAACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | |||||| ||| | |||| || || | || || || ||||||||||||| Sbjct 22895 TTGACCAAGGTGG---TAACAAGCGTCCTGGTGCTTTTGCTGTTTACCTTGAGCCATGGC 22951 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 | |||||| | | ||||||||||| | ||| || || ||| | || || | | || Sbjct 22952 ATGCGGATGTTTTCGAGTTCCTTGATCTACGTAAGAATCATGGTAAGGAAGAAGTTC-GT 23010 Query 112084 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 || ||||||||||||| ||| | |||||||| ||||| ||||||||| ||||||| || Sbjct 23011 GCACGCGATCTCTTCTACGCCTTGTGGATTCCTGATCTATTCATGAAGCGAGTTGAAAAG 23070 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202 | || | ||| ||||| | || || || | || || | | |||| ||| Sbjct 23071 AACGGAGAATGGACTCTCATGTGCCCCAACGAATGTCCAGGCTTGGCAGATGTTTATGGT 23130 Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGG 112260 |||||||| || || |||||| ||||| |||| || | | | | || ||| Sbjct 23131 GAGGAGTTCGAGGCTCTCTACGAGGGTTACGA-GAAGGCAGGCAAGGGTC-GCAAGACTA 23188 Query 112261 TGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 | ||| | | ||| | |||||||| | ||||||||||||| || | || | Sbjct 23189 TCAAGGCTCAAAAGCTTTGGTACTCTATTCTCGAAGCTCAAACCGAGACCGGAAATCCTT 23248 Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380 |||||||||||||| || || ||| | ||||| || |||||||| | ||| || Sbjct 23249 TCATGCTTTACAAAGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGGTACTATTC 23308 Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 112440 || |||||| | || ||||||||| |||| | | | ||||||| ||| | Sbjct 23309 GAAGCTCCAACTTGTGCACAGAAATCGTGGAGTACTCTGCACCAGATGAGGTTGCTTGCT 23368 Query 112441 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-ACATTTGAT 112499 ||||| | || || |||||| | || | | || | | || | | || | ||| Sbjct 23369 GTAACTTGGCTTCTATCGCTTTGCCAACATTCGT-CAACATGAATGAGGGAACTTATGAC 23427 Query 112500 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 | |||| || ||||| ||| | ||| | |||| | |||| | ||||| Sbjct 23428 TTCCAAAAGCTTCACGAGGTTGTTCAGGTTGTTGTTAGAAACTTGAACAAGATCATTGAC 23487 Query 112560 AGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 112618 | |||| || || || | ||| || | || ||| | |||| | || || | Sbjct 23488 ATCAATTACTATCCAGTCGCAGA-AGCCAGAAAGAGCAATTTCCGACATAGACCTATCGC 23546 Query 112619 TCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATTC 112675 | ||||||| |||||||| || |||| ||| | |||| ||| | |||| || || Sbjct 23547 TGTCGGTGTTCAAGGTCTTGCTGATGCTTTCTTGGCTCTTCGTCTTC---CATTCGACTC 23603 Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735 | ||||| ||| | |||| | || || ||||| || || |||||||| ||||| Sbjct 23604 CCCAGAAGCCAAGCACCTCAACATCCAAATTTTCGAGACTATCTACCACGCCGC-CTTGA 23662 Query 112736 GGCGAGTTCG--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 112793 | | || ||| | ||| ||| ||| ||||| || || | | | || |||||| Sbjct 23663 -CCTCATCCGTCGAGATTGCAAAGGAACTTGGCCCATACGACACTTATCAAGGCTCTCCA 23721 Query 112794 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACG 112851 | || | || | || |||| ||||||||||| || | ||| | || | | | Sbjct 23722 GTCTCGAAGGGAGAACTCCAATATGATATGTGGG-GTGTTACACCTA-CTGATTTGTGGG 23779 Query 112852 ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGG 112911 | |||||| | | ||| || ||||||| | | || | |||||| || | | | Sbjct 23780 ATTGGGACTCCTTGAAGCAATCCATCAAGCAACACGGAATCCGTAACTCCCTCCTCGTTG 23839 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGCTTTGAACCC 112970 |||| ||||| || || ||| | |||| |||||| | |||||||| || ||||| Sbjct 23840 CACCCATGCCTACTGCTAGCACATCCCAAATTCTTGGCT-TCAATGAATGTTTCGAACCT 23898 Query 112971 TACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA--CA 113028 ||||| | |||||||| | | || || ||||| || | || || || Sbjct 23899 TACACCTCAAACATCTACTCCCGTCGTGTTCTTGCCGGAGAATTCCAAGTCGTTAATCCA 23958 Query 113029 -AGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---T 113084 || |||| | ||||| || || ||||||||||| | | |||||| | | Sbjct 23959 TGGCTTCTC---AAAGACCTTGTCGATATGGGTCTCTGGTCTGACAACATGAAGAACCGT 24015 Query 113085 CTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAA 113143 ||| || ||| ||||| ||||| ||||| || ||||||||| ||| || || Sbjct 24016 ATCATTGCTGA----TGGTGGATCCATCCAAAACATCCCCAATATTCCAGCTGACATCAA 24071 Query 113144 GAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGA--TGTCATTGACATGGCCGCA 113201 | | ||| || |||||||||||| | || || | || | ||||| || Sbjct 24072 GGCTCTCTACAAGACCGTTTGGGAAATC--TCTCAACGAACAATTGTTCAAATGGCTGCT 24129 Query 113202 GATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACG 113261 ||||||||| || || |||||| |||| ||||| | |||| | ||| || Sbjct 24130 GATCGTGGTGCATTTATCGATCAATCTCAATCAATGAACATTCACATGAAGGATCCTACA 24189 Query 113262 ATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATG 113321 ||| ||| | | |||||||| | ||||||| |||| | || || || ||| Sbjct 24190 ATGGGTAAGATTACATCTATGCATTTTGCTGGTTGGAAATTGGGTTTGAAGACCGGAATG 24249 Query 113322 TATTACCTCCG 113332 || || || || Sbjct 24250 TACTATCTACG 24260 >seq2055 Length=75196 Score = 141 bits (156), Expect = 1e-28 Identities = 347/519 (67%), Gaps = 18/519 (3%) Strand=Plus/Plus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168 |||||| || || | ||||| || || |||||| | || ||| | | |||| | | Sbjct 73209 AGTTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAAATGGATCCAAGACAAGAACTC 73268 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 |||||||| | || ||| |||| || || |||||| |||||||||||||| || | Sbjct 73269 CA-CCTTTGCTCAACGTCTCGTCGCTTTCGCTGCTGTTGAAGGTATCTTCTTCTCCGGCT 73327 Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288 ||||| | | || | |||||||||||||| ||||||||| | || || |||||||| Sbjct 73328 CCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGGCCGGACTTACCTTCTCCA 73387 Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAAT 102348 |||| || ||||| ||||| ||||| |||||| || || || || ||| || | Sbjct 73388 ACGAACTCATCTCCCGTGATGAGGGTCTCCACACCGATTTCGC-ATG--CCTTCTC---T 73441 Query 102349 TATTGCGTATTAA------ACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCG 102402 | | | | | || ||| | | | | |||| | | ||| ||||||| Sbjct 73442 TCTCTCATCTCAAGCACCGCCCATCCAAGCAAGCCGTTCAAGATGTCATTACCGAAGCCG 73501 Query 102403 TTGAGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATT 102462 |||| || ||| | | |||| | || || ||||| || |||||| | || ||||| | Sbjct 73502 TTGAAATCGAGCAAGAATTCTTGACCGAGGCTCTTCCTTGTGCTCTCTTGGGCATGAACT 73561 Query 102463 CTGAAAAGATGTCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGG 102522 | | ||| |||| || |||| || ||||| | | | | | | | ||| Sbjct 73562 CCAACCTCATGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTCATG--GCTTTGGG 73619 Query 102523 TGCCTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGA 102580 | | ||| | | || || | || ||||| ||||||||||||||||| | | | Sbjct 73620 TAACGACAAATTCTACAAGTCTACCAACCCATTCGACTTCATGGAGAACATCTCCTTGGC 73679 Query 102581 CGGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 102619 || ||||| ||||||||||| ||||| ||||| || || Sbjct 73680 TGGTAAGACCAACTTCTTCGAGAAGAGAGTTGGTGATTA 73718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620722194834880