Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1009 215 6e-51 >seq1009 Length=94825 Score = 215 bits (238), Expect = 6e-51 Identities = 1105/1731 (64%), Gaps = 61/1731 (4%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 |||||| || ||||| |||||||| ||| |||||||||||| ||||| | | || Sbjct 24168 GTTCATTGATTGAGATTGATCGATAAATGCACCACGATCAGCAGCCATTTGAACAATTGT 24109 Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619 ||| |||||||| || |||||||| | | |||||| ||| | ||||| | Sbjct 24108 TCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATATTGGG 24049 Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCA-TGAGA---TCCTTCATCTCTTTCGACC 109675 ||||||||| || || |||||| ||| || ||| | | |||||| | | |||| Sbjct 24048 GATGTTTTGGATGGATCCACCA----TCAGCAATGATACGGTTCTTCATGTTGTCAGACC 23993 Query 109676 AGAGACCGACCTTTTTGAGATCGTCAACAAGATGCT-TG--TTGACCACGACAAATTCAC 109732 ||||||| | | | || | ||| ||| || || || || || ||||| | Sbjct 23992 AGAGACCCA---TATCGACAAGGTCTTTGAGAAGCCATGGATTAACGACTTGGAATTCTC 23936 Query 109733 CAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGC 109792 | ||||| || ||| ||||||||| | ||||| ||||||||||| |||||| || Sbjct 23935 CGGCAAGAACACGACGGGAGTAGATGTTTGAGGTGTAAGGTTCGAAACATTCATTGAAGC 23876 Query 109793 CTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGAC 109852 | || ||||| | ||| ||| || |||||||| || | ||| || ||| |||| | Sbjct 23875 CAAGAATTTGGGATGTGCTAGCAGTAGGCATGGGTGCAACGAGGAGGGAGTTACGGATTC 23816 Query 109853 CCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAA--ATTTAGT 109910 | | ||| | | || | ||||||||| |||| || | | || Sbjct 23815 CGTGTTGCTTGATGGATTGCTTCAAGGAGTCCCAATC-------CCACAAATCAGTAGGT 23763 Query 109911 CTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGA-AAC 109969 | || | |||||||||| ||| ||| | |||| | | ||||| || |||| || Sbjct 23762 GTAAC-ACCCCACATATCATATTGGAGTTCTCCCTTCGAGACTGGAGAGCC-TTGATAAG 23705 Query 109970 TCTCGTACGACCCCTCAACCTCGGCCAACTCG---GATGAAGCCTCTAGTGCCGCATGAT 110026 | ||||| | || ||| || | |||| ||||| | || || || || || | Sbjct 23704 TGTCGTATGGGCCAAGTTCCTTTGCAATCTCGACGGATGAGG--TCAAG-GCGGCGTGGT 23648 Query 110027 ACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGAC 110086 | |||||||| ||||| || || | | | | ||| ||||||| ||||||| Sbjct 23647 AGATAGTCTCGAAAATTTGGATGTTGAGGTGCTTGGCTTCTGGGGAGTCGAATGGAAGAC 23588 Query 110087 CACAAAG--AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTT 110144 | | || || ||| |||| || ||||| |||||||||| | | || || | ||| Sbjct 23587 GA-AGAGCCAAGAAAG-CATCAGCAAGACCTTGAACACCGACAGCGATAGGTCTATGTCG 23530 Query 110145 CATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAG 110204 | || || || | | || || || | ||| ||| |||| | || | Sbjct 23529 GAAATTGCTCTTTCTGGCTTCTGCGACTGGATAGTAATTGATGTCAATGATCTTGTTCAA 23470 Query 110205 ATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTC 110264 || | ||| || | || || || || | | | || | ||| | | Sbjct 23469 GTTTCTAACAACAACCTGAACAACCTCGTGAAGCTTTTGGAAGTCATAAGTTCCCTCATT 23410 Query 110265 CTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTT 110324 | | ||||| || | || | ||| ||||| || | || || || | ||| ||| Sbjct 23409 CATGTTGACGAATGTTGGCAAAGCGATAGAAGCCAAGTTACAGCAAGCAACCTCATCTGG 23350 Query 110325 GTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTT 110384 | | ||| |||| ||||| || ||||||||||| || ||| ||| | |||||| Sbjct 23349 TGCAGAGTACTCCACGATTTCTGTGCACAAGTTGGAGCTTCGAATAGTACCGAGGTTCTT 23290 Query 110385 CTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGT 110444 || || || |||||||||||| || || |||||| | || | || || || || Sbjct 23289 TTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGT 23230 Query 110445 CTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGT--TGCGTTAGCGAGA 110502 || | | |||||| | | ||| | | || || ||| |||| | | Sbjct 23229 TTGAGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTGCG--ACCCTTG 23172 Query 110503 CCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGA 110562 ||| ||| |||||| ||| | |||| || |||| || || ||||| | | | Sbjct 23171 CCTGCCTTCTCGTAACCCTCGTAGAGAGCCTCGAACTCCTCACCATAAACATCTGCCA-A 23113 Query 110563 CCCTTCGCCTT-GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCAT 110621 ||| | || || ||| || | ||| | ||| | ||| || ||||| | |||||| Sbjct 23112 GCCTGGACATTCGTTGGGGCACATGAGAGTCCATTCTCCGTTCTTTTCAACTCGCTTCAT 23053 Query 110622 GAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACC 110681 ||| || ||||||||||||| || |||| || || || |||| | ||||| | ||| Sbjct 23052 GAATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCCTTACC 22993 Query 110682 TTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC 110741 || || ||||| || | || || | | ||||| |||||||| || || || || Sbjct 22992 ATGATTCTTACGTAGATCAAGGAACTCGAAAACATCCGCATGCCATGGCTCAAGGTAAAC 22933 Query 110742 AGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATT 110795 ||| | | || | |||| ||| | |||| |||||| | || ||| || Sbjct 22932 AGCAAAAGCACC---AGGACGCTTGTTACCACCTTGGTCAACATATCTGGCAGTGTTGTT 22876 Query 110796 GAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACC-CCTAATTCTGG 110854 ||| || | ||||||||||| ||| || | || | ||||| ||||| | | | || Sbjct 22875 GAAAACTCGGAGCATAGGAACAATACCGTTAGAGTTTCCATTGGTACCAGCGATGTATGC 22816 Query 110855 ACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTT 110914 || | | ||||| || ||| || | | |||||||||||| || ||| || Sbjct 22815 AC-CAGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCAGCATTCTTTGAGATCA 22757 Query 110915 GTGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATT 110973 ||||| ||| | | || | |||||||||||||| ||| |||| || | || Sbjct 22756 TGGCACAGATCT-TCAAAGTGTCGTAAATACCATCAATACTATCCTCCTTCATGTCGATG 22698 Query 110974 AGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCA 111033 || ||||| || || | || | | || || |||||| ||||||||| || | ||| Sbjct 22697 AGGAAGCACGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGGGAGGCA 22638 Query 111034 TGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTT 111091 || || | || |||| |||||| ||| ||||| |||| || | ||| | Sbjct 22637 TG--TGTAAAGTACTTGTTCGACATCAAGTTATATGTTTCGATAGCACTTTCGATATCAT 22580 Query 111092 TACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTC 111151 |||||||||||||| |||||| ||||||| ||| | ||| || ||| | ||| | Sbjct 22579 CACCGTGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTGC 22520 Query 111152 CATCAACACGCTGAAGGTA-ACTCTTCTCTAGGGTCTTGAGACCAAAGTAT 111201 |||| | ||| ||||||| || | || || || |||| || |||||| Sbjct 22519 CATCGAGACGTAGAAGGTATGATCGT-TCAAGTGTTTTGAAGCCGAAGTAT 22470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588956828831200