Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1009 248 1e-60 seq2055 116 4e-21 >seq1009 Length=94825 Score = 248 bits (274), Expect = 1e-60 Identities = 741/1124 (66%), Gaps = 47/1124 (4%) Strand=Plus/Minus Query 106278 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 106337 |||| || |||||||||||||| | | | |||||||| ||||| | ||| ||||| | Sbjct 23572 CATCAGCAAGACCTTGAACACCGACAGCGATAGGTCTATGTCGGAAATTGCTCTTTCTGG 23513 Query 106338 CAGTCT-CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 106396 | ||| | || ||||| |||| ||||||||| ||| | ||| | ||||| | Sbjct 23512 CT-TCTGCGACTGGATAGTAATTGATGTCAATGATCTTGTTCAAGTTTCTAACAACAACC 23454 Query 106397 TTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTC-TTCAT--TGACATAC 106453 | | || ||||| |||| | ||| |||| | ||| ||||| |||| | Sbjct 23453 TGAACAACCTCGTGAAGCTTTTGGAAGTCATAAGTTCC---CTCATTCATGTTGACGAAT 23397 Query 106454 TTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCT 106513 |||| | ||||| || ||||| || || ||| |||||| | | |||||| Sbjct 23396 GTTGGCAAAGCGATAGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGCAGAGTACTCC 23337 Query 106514 AAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTT 106573 | |||||||| ||||||||||| || ||| || || | ||||||||||| ||||| Sbjct 23336 ACGATTTCTGTGCACAAGTTGGAGCTTCGAATAGTACCGAGGTTCTTTTGGTTGCTCTTC 23277 Query 106574 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGA 106633 |||||||| ||||| ||||| |||||| | || | || ||||| || || | | |||| Sbjct 23276 TTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTTTGAGCTTCGAGA 23217 Query 106634 ATTGCCTTCCACA-CATCGGCGGC-TGGTACAATGGCGTTGGCCCGTCCCT-CCGCCTCG 106690 || | | ||| | | | | | | || || | || | ||| | ||| || |||| Sbjct 23216 ATAGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTGC---GACCCTTGCCTGCCTTCTCG 23160 Query 106691 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG 106750 || |||||| || || ||||||||||| | || | | ||||| | | Sbjct 23159 TAACCCTCGTAGAGAGCCTCGAACTCCTCACCATAAACATCTGCCAAGCCTGGACATTCG 23100 Query 106751 TCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGA 106810 | || || | |||| ||||| || || ||||| ||||||||||| || || ||| Sbjct 23099 TTGGGGCACATGAGAGTCCATTCTCCGTTCTTTTCAACTCGCTTCATGAATAGATCAGGA 23040 Query 106811 ATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 106869 ||||||| || | |||||||| | | || ||| | ||||| | ||| || || || Sbjct 23039 ATCCACAAGGCGTAGAAGAGATCGCGTGCA-CGAACTTCTTCCTTACCATGATTCTTACG 22981 Query 106870 TAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC 106929 || ||||||||||| | | |||||| |||||||||||||| || || || | || || Sbjct 22980 TAGATCAAGGAACTCGAAAACATCCGCATGCCATGGCTCAAGGTAAACAGCAAAAGCACC 22921 Query 106930 CTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 106983 ||||| ||| |||| | ||||| | || ||| ||| || || || || Sbjct 22920 ---AGGACGCTTGTTACCACCTTGGTCAACATATCTGGCAGTGTTGTTGAAAACTCGGAG 22864 Query 106984 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 107043 ||| |||| |||||| | || | ||||| || || | ||| ||| || | Sbjct 22863 CATAGGAACAATACCGTTAGAGTTTCCATTGGTACC-------AGCGATGTAT--GCACC 22813 Query 107044 CACATCATGGA---TGTGCAT------CCCAATACCCCCAGCCCACTTTGAGATTTGCGC 107094 | || ||| |||| || |||||||| ||||| ||||||||| || Sbjct 22812 AGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCAGCATTCTTTGAGATCATGGC 22753 Query 107095 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 107154 ||| | | | ||| | || ||||| | || |||||||| || |||| ||||| Sbjct 22752 ACAGATCTTCAAAGTGTCGTAAATACCATCAATACTATCCTCCTTCATGTCGATGAGGAA 22693 Query 107155 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 107214 ||| || | || | | ||| ||||| ||| |||||| ||||| | || || | Sbjct 22692 GCACGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGGGAGGCATGTGT 22633 Query 107215 GAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGT 107273 || ||| | | |||||| || ||||| || | || || || || || |||| Sbjct 22632 -AAAGTACTTGTTCGACATCAAGTTATATGTTTCGATAGCACTTTCGATATCATCACCGT 22574 Query 107274 GGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGA 107333 | || || | ||| |||||||| | ||| | ||| || ||| | ||||||||| Sbjct 22573 GAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTGCCATCGA 22514 Query 107334 GCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 | ||| |||| || | || | ||||| ||||||| || ||||| Sbjct 22513 GACGTAGAAGGTATGATCGT-TCAAGTGTTTTGAAGCCGAAGTA 22471 >seq2055 Length=75196 Score = 116 bits (128), Expect = 4e-21 Identities = 342/519 (66%), Gaps = 20/519 (4%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || ||||||| |||||| |||||||||||||| ||| | | | ||||| ||||| Sbjct 73718 TAATCACCAACTCTCTTCTCGAAGAAGTTGGTCTTACCAGCCAAGGAGATGTTCTCCATG 73659 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCA-AATGGGTGGCACCCCAACTTGTTTGAGGAGACG 117104 ||||| ||||| || | | || | ||| || | ||||| | ||||||||| Sbjct 73658 AAGTCGAATGGGTTGGTAGACTTGTAGAATTTGTCGTTACCCAAAGCCAT-GAGGAGACG 73600 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 ||| | || |||| ||||| | ||| | |||||||| || | |||| ||| Sbjct 73599 ATCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGAGTTCATGCCCAAGAGAGCACA 73540 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 || || || || | ||| ||| ||| || ||||| || || | | || | || Sbjct 73539 AGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTTCAACGGCTTCGGTAATGACATCTTG 73480 Query 117225 GA----TAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA---- 117276 | | | || | | | ||| | | | || |||||| | |||| Sbjct 73479 AACGGCTTGCTTGGATGGGCGGTGCTTGA-GATGAGA---GAAGAG----AAGGCATGCG 73428 Query 117277 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGC 117336 || || ||||||||||||||| ||||| || ||||| || |||||| || || | | Sbjct 73427 AAATCGGTGTGGAGACCCTCATCACGGGAGATGAGTTCGTTGGAGAAGGTAAGTCCGGCC 73368 Query 117337 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 117396 |||||||| |||||||| | ||| | || | | ||| || ||||||||||||||||| Sbjct 73367 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCT 73308 Query 117397 TCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCA 117455 || ||| || || || | || || | || |||| | ||| |||| | | ||| Sbjct 73307 TCAACAGCAGCGAAAGCGACGAGACGTTGAGCAAAGGTG-GAGTTCTTGTCTTGGATCCA 73249 Query 117456 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTAC 117494 ||| | ||||| | |||||||||| || || || || Sbjct 73248 TTTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAAC 73210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589961596124960