Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2078 141 1e-28 >seq2078 Length=24173 Score = 141 bits (156), Expect = 1e-28 Identities = 200/281 (71%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||||| | || | | ||| | ||||| |||| | || ||||| ||||| ||| Sbjct 3102 GATATTGCTTTTGGAAATGCTCAACGTTTTGGAGTTCCATTCGGTTATGGTGGTCCACAT 3043 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 153866 ||||| ||||| || |||||||| ||||||||||| || || | | | ||| Sbjct 3042 GCTGCTTTCTTCGCTGTTGGCGACAAGTACAAGAGAAAGATTCCAGGACGTCTCATTGGT 2983 Query 153867 CAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 153926 || ||||| ||| |||| ||| ||||| || |||| |||||||| ||| Sbjct 2982 GTATCGAAGGATAGATTAGGGGATAAGGCAATGAGATTGGCTTTACAAACTAGAGAACAG 2923 Query 153927 CATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAAT 153986 |||||| | ||||| || || || ||||| ||||||| ||||| ||| | |||| || Sbjct 2922 CATATCCGCAGAGAAAAGGCTACTAGTAATGTCTGCACGGCTCAAGCATTATTGGCCAAC 2863 Query 153987 ATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACT 154027 ||| || ||||||||||| || ||||| |||| ||||| Sbjct 2862 ATGAGTGCATTCTATGCAGTCTACCATGGGCCAGAAGGACT 2822 Score = 138 bits (152), Expect = 1e-27 Identities = 173/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 154871 TATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTA-GACAGATAT 154929 ||| ||||| ||||||||| |||| ||||||||||||| | | | | | | | || Sbjct 1909 TATCATGATCACATACCCAAGTACATTTGGTGTATTTGAACCAGAAGTCAAGGCTGC-AT 1851 Query 154930 GTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCAC 154989 || | || |||||| | |||||||||| ||||| | || || || || | ||||| | Sbjct 1850 GTGACATTGTTCATCAGCATGGTGGTCAAGTATACATGGACGGTGCCAACATGAATGCTC 1791 Query 154990 AGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATA 155049 || | ||| | ||| |||| |||||| ||||| || ||||| ||| | || | Sbjct 1790 AGATCGGATTGTGTTCACCCGGTGAAATTGGTGCCGATGTGTGCCATCTTAACCTTCACA 1731 Query 155050 AAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 | |||||||||||||| ||||||||||| || ||||| || |||||||| ||||| Sbjct 1730 AGACATTCTGTATTCCTCATGGAGGTGGTGGACCTGGTGTTGGTCCTATTGGTGT 1676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579193946623360