Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05]
2,604 sequences; 40,732,201 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq2078 141 1e-28
>seq2078
Length=24173
Score = 141 bits (156), Expect = 1e-28
Identities = 200/281 (71%), Gaps = 0/281 (0%)
Strand=Plus/Minus
Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806
||||||||| | || | | ||| | ||||| |||| | || ||||| ||||| |||
Sbjct 3102 GATATTGCTTTTGGAAATGCTCAACGTTTTGGAGTTCCATTCGGTTATGGTGGTCCACAT 3043
Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 153866
||||| ||||| || |||||||| ||||||||||| || || | | | |||
Sbjct 3042 GCTGCTTTCTTCGCTGTTGGCGACAAGTACAAGAGAAAGATTCCAGGACGTCTCATTGGT 2983
Query 153867 CAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 153926
|| ||||| ||| |||| ||| ||||| || |||| |||||||| |||
Sbjct 2982 GTATCGAAGGATAGATTAGGGGATAAGGCAATGAGATTGGCTTTACAAACTAGAGAACAG 2923
Query 153927 CATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAAT 153986
|||||| | ||||| || || || ||||| ||||||| ||||| ||| | |||| ||
Sbjct 2922 CATATCCGCAGAGAAAAGGCTACTAGTAATGTCTGCACGGCTCAAGCATTATTGGCCAAC 2863
Query 153987 ATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACT 154027
||| || ||||||||||| || ||||| |||| |||||
Sbjct 2862 ATGAGTGCATTCTATGCAGTCTACCATGGGCCAGAAGGACT 2822
Score = 138 bits (152), Expect = 1e-27
Identities = 173/235 (74%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 154871 TATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTA-GACAGATAT 154929
||| ||||| ||||||||| |||| ||||||||||||| | | | | | | | ||
Sbjct 1909 TATCATGATCACATACCCAAGTACATTTGGTGTATTTGAACCAGAAGTCAAGGCTGC-AT 1851
Query 154930 GTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCAC 154989
|| | || |||||| | |||||||||| ||||| | || || || || | ||||| |
Sbjct 1850 GTGACATTGTTCATCAGCATGGTGGTCAAGTATACATGGACGGTGCCAACATGAATGCTC 1791
Query 154990 AGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATA 155049
|| | ||| | ||| |||| |||||| ||||| || ||||| ||| | || |
Sbjct 1790 AGATCGGATTGTGTTCACCCGGTGAAATTGGTGCCGATGTGTGCCATCTTAACCTTCACA 1731
Query 155050 AAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104
| |||||||||||||| ||||||||||| || ||||| || |||||||| |||||
Sbjct 1730 AGACATTCTGTATTCCTCATGGAGGTGGTGGACCTGGTGTTGGTCCTATTGGTGT 1676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579193946623360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |