Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2078 159 4e-34 >seq2078 Length=24173 Score = 159 bits (176), Expect = 4e-34 Identities = 178/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 159546 TATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCA-GACAGATAT 159604 ||| ||||| ||||| ||| |||| ||||||||||||| || | ||| | | | || Sbjct 1909 TATCATGATCACATACCCAAGTACATTTGGTGTATTTGAACCAGAAGTCAAGGCTGC-AT 1851 Query 159605 GTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCAC 159664 || | ||||||||| || |||||||||| ||||| | || ||||| || | ||||| | Sbjct 1850 GTGACATTGTTCATCAGCATGGTGGTCAAGTATACATGGACGGTGCCAACATGAATGCTC 1791 Query 159665 AGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATA 159724 || | || | ||| |||| |||||| ||||| || ||||| ||| | || | Sbjct 1790 AGATCGGATTGTGTTCACCCGGTGAAATTGGTGCCGATGTGTGCCATCTTAACCTTCACA 1731 Query 159725 AGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||||||||||| ||||||||||| || ||||| || |||||||||||||| Sbjct 1730 AGACATTCTGTATTCCTCATGGAGGTGGTGGACCTGGTGTTGGTCCTATTGGTGT 1676 Score = 129 bits (142), Expect = 7e-25 Identities = 197/281 (70%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481 || |||||| | || | | ||| | ||||| |||| | || || || ||||| ||| Sbjct 3102 GATATTGCTTTTGGAAATGCTCAACGTTTTGGAGTTCCATTCGGTTATGGTGGTCCACAT 3043 Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 158541 ||||| ||||| || |||||||| ||||||||||| || || | | | ||| Sbjct 3042 GCTGCTTTCTTCGCTGTTGGCGACAAGTACAAGAGAAAGATTCCAGGACGTCTCATTGGT 2983 Query 158542 CAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 158601 || ||||| ||| |||| ||| ||||| || |||| |||||||| ||| Sbjct 2982 GTATCGAAGGATAGATTAGGGGATAAGGCAATGAGATTGGCTTTACAAACTAGAGAACAG 2923 Query 158602 CATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAAT 158661 |||||| | ||||| || || || ||||| ||||||| || |||||| | |||| || Sbjct 2922 CATATCCGCAGAGAAAAGGCTACTAGTAATGTCTGCACGGCTCAAGCATTATTGGCCAAC 2863 Query 158662 ATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGGACT 158702 ||| || |||||||||| || ||||| |||| ||||| Sbjct 2862 ATGAGTGCATTCTATGCAGTCTACCATGGGCCAGAAGGACT 2822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588032058933440