Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2210 150 4e-31 seq2089 140 7e-28 >seq2210 Length=20483 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | || | |||||| || ||||| || || || |||||||||| || || | Sbjct 17771 AGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTACGG 17712 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| ||||| || || || |||||||| | |||||||| || ||||| |||||||| Sbjct 17711 CCATCCTCGAGTTGTTTGCCGGCGAAGATCAAACGTTGTTGATCGGGAGGGATGCCTTCC 17652 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||||||||| || |||||||| || |||||||| ||| ||| || || |||||| Sbjct 17651 TTGTCTTGAATCTTCGATTTGACGTTGTCGATGGTGTCGGAAGATTCAACCTCGAGGGTA 17592 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTAC 195128 | |||||||| || | ||| || || Sbjct 17591 ATGGTCTTTCCCGTGAGAGTCTTAAC 17566 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 || ||||||||||||||||| | ||| ||||| ||||| || | |||||| ||||| ||| Sbjct 18200 TCCTTTTGAATATTGTAATCCGAAAGGGTTCTGCCATCCTCCAACTGCTTTCCTGCAAAG 18141 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || | ||||||||| || || |||||||| || || || || || || ||| || || Sbjct 18140 ATCAATCGTTGTTGATCAGGTGGAATGCCCTCCTTATCCTGGATCTTCGACTTAACATTA 18081 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 ||||| || || || ||| ||||| | |||| |||||||| ||||| || || || Sbjct 18080 TCAATAGTATCTGACGATTCTACTTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTGACA 18021 Query 195130 AACACTTGCAT 195140 || | |||||| Sbjct 18020 AAGATTTGCAT 18010 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || ||||| || |||||||| | |||||| | ||||| || | ||||||||| Sbjct 17978 GTCGATTCCTTTTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCCAACTGCTTACCA 17919 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || |||||||| |||||||| || || || || || || || ||||| || || ||| Sbjct 17918 GCAAAGATAAGACGTTGTTGATCAGGTGGGATACCCTCCTTATCTTGGATCTTGGACTTC 17859 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || ||||||||||| || || || | || | ||||| || || | || Sbjct 17858 ACATTGTCGATGGTGTCCGATGACTCAACCTCCAAAGTGATTGTCTTCCCAGTGAGGGTC 17799 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 17798 TTGACGAAGATTTGCAT 17782 Score = 105 bits (116), Expect = 1e-17 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCT 194981 ||||| | || | ||| ||||| ||||| || || || ||||||||| |||| || | Sbjct 17488 AGTCTGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAAG-GTGCG 17430 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||||||||| || || || ||||| || | || |||||||| |||||||| || || Sbjct 17429 ACCATCTTCGAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGGTCAGGAGGAATTCCCTC 17370 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| || || || ||||| || |||||||| || ||| || ||||| || Sbjct 17369 CTTGTCCTGGATCTTGGATTTGACATTGTCAATGGTATCGCTGGATTCGACCTCAAGAGT 17310 Query 195102 AACCGTCTTTCCTGT 195116 | |||||||| || Sbjct 17309 GATGGTCTTTCCGGT 17295 >seq2089 Length=24093 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||| ||||||||||| ||||| || ||||| |||| ||| || | |||||| Sbjct 11810 AACACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCT 11751 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||| ||||| || |||||||| | ||| |||||||| || || || || || ||||| Sbjct 11750 TCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATTCCCTCCTTGTCC 11691 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || || || |||||| || || |||||||||||| || || || ||||| | || Sbjct 11690 TGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTT 11631 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || ||||| | ||||| Sbjct 11630 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 11599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109444583533268