Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2089 113 3e-20 seq2210 93.3 3e-14 >seq2089 Length=24093 Score = 113 bits (124), Expect = 3e-20 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 || |||||||| | ||| || || || ||||| ||||| |||||| | || |||| Sbjct 11810 AACACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCT 11751 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 || || || |||||||| || || | ||| || ||||| | || | ||||||||||| Sbjct 11750 TCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATTCCCTCCTTGTCC 11691 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTAT 34945 ||||| ||||| || | ||||| | ||| | |||||| |||| ||| || Sbjct 11690 TGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGAT 11635 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||| |||||||| ||||| || ||||||||||| Sbjct 11634 GGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 11599 >seq2210 Length=20483 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || ||||| ||||| || || || || | || |||| || Sbjct 17762 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTACGGCCATCCTCG 17703 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| ||||| || || | ||||| || || | || | || |||||||| | Sbjct 17702 AGTTGTTTGCCGGCGAAGATCAAACGTTGTTGATCGGGAGGGATGCCTTCCTTGTCTTGA 17643 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| ||||||| | || | || | ||||| |||| ||| ||||| ||| Sbjct 17642 ATCTTCGATTTGACGTTGTCGATGGTGTCGGAAGATTCAACCTCGAGGGTAATGGTCTTT 17583 Query 34953 CCCGTGAGAGTCTTCACAA 34971 |||||||||||||| |||| Sbjct 17582 CCCGTGAGAGTCTTAACAA 17564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324623297346912