Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05]
2,604 sequences; 40,732,201 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq2089 113 3e-20
seq2210 93.3 3e-14
>seq2089
Length=24093
Score = 113 bits (124), Expect = 3e-20
Identities = 157/216 (73%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829
|| |||||||| | ||| || || || ||||| ||||| |||||| | || ||||
Sbjct 11810 AACACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCT 11751
Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889
|| || || |||||||| || || | ||| || ||||| | || | |||||||||||
Sbjct 11750 TCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATTCCCTCCTTGTCC 11691
Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTAT 34945
||||| ||||| || | ||||| | ||| | |||||| |||| ||| ||
Sbjct 11690 TGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGAT 11635
Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|||||| |||||||| ||||| || |||||||||||
Sbjct 11634 GGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 11599
>seq2210
Length=20483
Score = 93.3 bits (102), Expect = 3e-14
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||||| || || ||||| ||||| || || || || | || |||| ||
Sbjct 17762 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTACGGCCATCCTCG 17703
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|| ||||| ||||| || || | ||||| || || | || | || |||||||| |
Sbjct 17702 AGTTGTTTGCCGGCGAAGATCAAACGTTGTTGATCGGGAGGGATGCCTTCCTTGTCTTGA 17643
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|||||| ||||||| | || | || | ||||| |||| ||| ||||| |||
Sbjct 17642 ATCTTCGATTTGACGTTGTCGATGGTGTCGGAAGATTCAACCTCGAGGGTAATGGTCTTT 17583
Query 34953 CCCGTGAGAGTCTTCACAA 34971
|||||||||||||| ||||
Sbjct 17582 CCCGTGAGAGTCTTAACAA 17564
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324623297346912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |