Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1009 165 9e-36 >seq1009 Length=94825 Score = 165 bits (182), Expect = 9e-36 Identities = 533/822 (65%), Gaps = 8/822 (1%) Strand=Plus/Minus Query 47991 TTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATG 48050 ||||| ||||| || ||||||||||| ||||| |||| || || | |||| ||| | Sbjct 23276 TTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTTTGAGCTTCGAGA 23217 Query 48051 ATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTAT 48110 ||||| | ||||| | |||||| ||| | | | || | | ||||| Sbjct 23216 ATAGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTGCGACCCTTGCCTGCCTTCTCGTAA 23157 Query 48111 T--TAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCAT 48168 | ||| | | | ||| || || || ||||| |||| | || || |||||||| | Sbjct 23156 CCCTCGTAGAGAGC--CTCGAACTCCTCACCATAAACATCTGCCAAGCCTGGACATTCGT 23099 Query 48169 TAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTA 48228 | || ||||| | | ||| || | | |||| |||| |||| |||| ||| || | Sbjct 23098 TGGGGCACATGAGAGTCCATTCTCCGTTCTTTTCAACTCGCTTCATGAATAGATCAGGAA 23039 Query 48229 TCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAA 48288 |||| | || || | ||| | | | | |||||| || ||| |||| | | Sbjct 23038 TCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCCTTACCATGATTCTTACGTA 22979 Query 48289 GTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTG 48348 | ||||| || || | | ||| ||||||||||| || | || | || | |||| | Sbjct 22978 GATCAAGGAACTCGAAAACATCCGCATGCCATGGCTCAAGGTAAACAGCAAAAGCACCAG 22919 Query 48349 GTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTG 48408 | || || ||||| ||||| || | |||||||||||| ||||| |||||| | ||| | Sbjct 22918 GACGCTTGTTACCACCTTGGTCAACATATCTGGCAGTGTTGTTGAAAACTCGGAGCATAG 22859 Query 48409 GGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATAT 48468 | |||||||| || || | |||||||| || | || || ||| |||| | || Sbjct 22858 GAACAATACCGTTAGAGTTTCCATTGGTACCAGCGATGTATGCACCAGTAGCACGGATTC 22799 Query 48469 TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGG 48528 | ||| | ||| |||||||| || | || || || | ||||| || | | Sbjct 22798 TGTGAATGTTGAGACCAATACCACCAGCATTCTTTGAGATCATGGCACAGATCTTCAAAG 22739 Query 48529 TATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTT 48588 | || ||||| || || |||||||| || |||| | | || || || || | || Sbjct 22738 TGTCGTAAATACCATCAATACTATCCTCCTTCATGTCGATGAGGAAGCACGATGAAAGTT 22679 Query 48589 GCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTG 48648 | | || ||| || | | || | |||||| || ||||| |||| | || | | Sbjct 22678 GTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGGGAGGCATGTGTAAAGTACTTGTTCG 22619 Query 48649 ATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGAT 48707 | | ||| ||||||||||| ||| || || ||||| || | || ||||| | | Sbjct 22618 ACATCAAGTTATATGTTTCGATAGCACTTTCGATATCATCACCG-TGAATACCAACGGCA 22560 Query 48708 ACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATAT 48767 |||||||| | ||| | ||| || | ||| ||| ||| || | | ||| ||| Sbjct 22559 ACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTGCCATCGAGACGTAGAAGGTAT 22500 Query 48768 GATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA--TGAAA 48807 ||| ||| | |||||| || || || || | ||| ||||| Sbjct 22499 GATCGTTCAAGTGTTTTGAAGCCGAAGTATTGGTAGTTGAAA 22458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562090503358560