Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1456 165 7e-35 seq2170 100 2e-15 >seq1456 Length=91500 Score = 165 bits (182), Expect = 7e-35 Identities = 395/591 (67%), Gaps = 6/591 (1%) Strand=Plus/Minus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| ||||| ||||| || ||||| || |||||| ||| | | | ||| || | | Sbjct 55687 TATTGGTATCGATTTGGGTACCACCTACTCTTGTGTGGGTATCTTCCGTGATGATAGAAT 55628 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 |||||||| ||||| || ||||| ||| | || || ||||| | ||| | ||||| || Sbjct 55627 CGAAATTATCGCCAACGACCAAGGAAACCGTACCACACCATCCTTCGTTGCCTTCACAGA 55568 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 ||||| | ||| | || ||||| || || | |||| | | || || | ||| || Sbjct 55567 TACTGAGCGTTTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCAATCAACAC 55508 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAG 550232 | || |||||||| ||||| || ||| | ||||| | ||| | ||||| || | Sbjct 55507 CGTCTTCGATGCTAAGCGTTTGATCGGACGCAAGTTCGCA-GATGCTGAGGTTCAAGCTG 55449 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CT 550291 |||||||||||| || ||| | | ||| | | | ||||| || || || | | Sbjct 55448 ATATGAAGCATTTCCCATTCAAGGTCGTTGACCGTGCCGGAAAGCCAGTCATCGAGGTCG 55389 Query 550292 ACTCATGAAGGATCTG-TTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | | | |||| | || ||||| |||||||| |||| || || ||| | || | Sbjct 55388 AGT--TCAAGGGCGAGAACAAGCAATTCACACCAGAAGAAATCTCTTCCATGATCTTGGT 55331 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 || |||| | | || || |||| | ||| | || | | || || | || Sbjct 55330 CAAGATGAGAGAGACTGCTGAGGCTTACCTCGGTGGAACCGTCAACAACGCCGTCGTCAC 55271 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 || ||||| || || | || || ||||||||||||||||| || ||||| | || || Sbjct 55270 AGTTCCAGCTTACTTCACCGATTCCCAACGTCAAGCTACTAAGGACGCTGGTCTCATCGC 55211 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| || || ||||| ||||| ||||| |||||||| || ||||| |||| || || | Sbjct 55210 TGGTCTCAACGTTCTCCGTATCATCAACGAACCTACCGCAGCTGCCATTGCTTACGGTTT 55151 Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || || | | || || | ||| || |||||||| ||| ||| || Sbjct 55150 GGACAAGAAGATCGAGGGTGAGCGTAACGTTCTCATCTTCGATCTTGGTGG 55100 >seq2170 Length=21416 Score = 100 bits (110), Expect = 2e-15 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| || || || ||| |||||||||||||| || |||||| Sbjct 14650 GCCGTCATCACTGTCCCAGCCTACTTCAACGACAACCAACGTCAAGCTACCAAGGATGCT 14709 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || ||||| ||||| ||||| ||||| ||||| || ||||| |||||||| | Sbjct 14710 GGTGCCATCGCTGGTCTTAACGTTCTCCGTATCATCAACGAGCCTACCGCTGCTGCCATC 14769 Query 550520 GCATATGGACTTG 550532 || || || |||| Sbjct 14770 GCTTACGGTCTTG 14782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029158288735960