Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2210 125 6e-24 seq1994 93.3 3e-14 >seq2210 Length=20483 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 101278 TTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAA 101337 ||| ||||| ||||||||||| | | |||||| |||| ||||| ||||| |||||||| Sbjct 18201 TTCCTTTTGAATATTGTAATCCGAAAGGGTTCTGCCATCCTCCAACTGCTTTCCTGCAAA 18142 Query 101338 TATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAAT 101397 ||||| || |||||||| || |||||||| || ||||| || || || || ||| | Sbjct 18141 GATCAATCGTTGTTGATCAGGTGGAATGCCCTCCTTATCCTGGATCTTCGACTTAACATT 18082 Query 101398 TTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTAC 101457 || | ||| || |||| ||| ||||| | || | || || || || || || || || Sbjct 18081 ATCAATAGTATCTGACGATTCTACTTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTGAC 18022 Query 101458 AAATATCTGCAT 101469 ||| || ||||| Sbjct 18021 AAAGATTTGCAT 18010 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||||||||| || || || || |||||||||| || || | | |||| || Sbjct 17762 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTACGGCCATCCTCG 17703 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| || || || || |||||||| ||||||||||| || |||||||| || |||||| Sbjct 17702 AGTTGTTTGCCGGCGAAGATCAAACGTTGTTGATCGGGAGGGATGCCTTCCTTGTCTTGA 17643 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| || | || | ||||| || | ||| || || || || | || || Sbjct 17642 ATCTTCGATTTGACGTTGTCGATGGTGTCGGAAGATTCAACCTCGAGGGTAATGGTCTTT 17583 Query 101441 CCGGTTAAAGTTTTTACAA 101459 || || | ||| || |||| Sbjct 17582 CCCGTGAGAGTCTTAACAA 17564 >seq1994 Length=27662 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 ||||| || |||||||| | || ||| | | || ||||||||||| || || || ||| Sbjct 3891 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCCTCCAATTGCTTTCCAGCGAAGATC 3950 Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401 ||||| ||||||||||| ||||| || || || || || || || || ||| | || Sbjct 3951 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4010 Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | ||||| || | || || ||||| |||| || ||||| || Sbjct 4011 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 4054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396265823609628