Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2210 132 4e-26 seq2089 82.4 6e-11 >seq2210 Length=20483 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || | ||||| || ||||||||||||||||| || || ||| Sbjct 18227 AGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAGGGTTCTG 18168 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| |||| ||| |||||||| | |||| ||||||| Sbjct 18167 CCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCCTCC 18108 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || ||| | | | || ||||||| || || |||| ||| Sbjct 18107 TTATCCTGGATCTTCGACTTAACATTATCAATAGTATCTGACGATTCTACTTCCAATGTA 18048 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| || || ||||| || ||||| Sbjct 18047 ATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 18010 >seq2089 Length=24093 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || |||||||| || || ||| ||| ||||| || ||||| || || || | || Sbjct 11816 AGACGTAACACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGG 11757 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||| ||||| || |||| ||||||||| || | || | |||||| Sbjct 11756 CCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATTCCCTCC 11697 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 11696 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTG 11637 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| | || || || || |||||||| Sbjct 11636 ATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 11599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380925510469092