Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2055 170 4e-37 seq1009 84.2 4e-11 >seq2055 Length=75196 Score = 170 bits (188), Expect = 4e-37 Identities = 354/520 (68%), Gaps = 19/520 (4%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| || || ||||| ||||| |||||||| ||||| || |||| |||||||||||| Sbjct 73721 TGGTAATCACCAACTCTCTTCTCGAAGAAGTTGGTCTTACCAGCCAAGGAGATGTTCTCC 73662 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGG-CCCATCTGTTCCAGCAG 47958 |||||| ||| ||||||| | || || | |||| |||| || || Sbjct 73661 ATGAAGTCGAATGGGTTGGTAGACTTGTAGAATT-TGTCGTTACCCAAAGCCATGAGGAG 73603 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 |||| || ||| |||||||||||| ||||||| || ||||||||| | ||| | Sbjct 73602 ACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGAGTTCATGCCCAAGAGAG- 73544 Query 48019 CACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| | || ||||| || | || || | ||| || | |||||||| | | | Sbjct 73543 CACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTTCAACGGCTTCGGTAATGACAT 73484 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCAT------AGAGCATGC 48131 | |||| || | || | || || |||||||| || |||| | || Sbjct 73483 CTTGAACGG------CTT--GCTTGGATGGGC-GGTGCTTGAGATGAGAGAAGAGAAGGC 73433 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 | || || || |||| | || || || ||| |||||| ||||||||||| || | Sbjct 73432 ATGCGAAATCGGTGTGGAGACCCTCATCACGGGAGATGAGTTCGTTGGAGAAGGTAAGTC 73373 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 | | ||||| || | || ||||||||||| || | ||||| ||||| |||||||||| Sbjct 73372 CGGCCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGA 73313 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 | || || || || ||||| ||| ||| | | | || | | |||||||||| || Sbjct 73312 TACCTTCAACAGCAGCGAAAGCGACGAGACGTTGAGCAAAGGTGGAGTTCTTGTCTTGGA 73253 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 |||| | |||||||| ||||||||||||||||| || Sbjct 73252 TCCATTTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 73213 >seq1009 Length=94825 Score = 84.2 bits (92), Expect = 4e-11 Identities = 239/364 (66%), Gaps = 5/364 (1%) Strand=Plus/Minus Query 213779 GGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGAC 213838 ||| |||||||| |||| || |||| | | |||| || |||||| || || || | Sbjct 23097 GGGGCACATGAGAGTCCATTCTCCGTTCTTTTCAACTCGCTTCATGAATAGATCAGGAAT 23038 Query 213839 CCACAGCGCGGTGAACAGGTCCC-TGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCA 213897 ||||| ||| ||| || || | || | || || ||| ||| || || || | Sbjct 23037 CCACAAGGCGTAGAAGAGATCGCGTGCACGAACT-TCTTCCTTACCATGATTCTTACGTA 22979 Query 213898 GATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG 213957 |||| || || || || | ||||| ||||| ||||| | ||| | ||||| || || | Sbjct 22978 GATCAAGGAACTCGAAAACATCCGCATGCCATGGCTCAAGGTAAACAGCAAAAGCACCAG 22919 Query 213958 GCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGG 214014 | | |||| || || ||||| || ||||| ||||||| | || || | | Sbjct 22918 GACGCTTGTTACCACCTTGGTCAACATATCTGGCAGTGTTGTTGAAAACTCGGAGCATAG 22859 Query 214015 GTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGT 214074 | || | ||||| || | ||| ||||| || || || || | || | || | | Sbjct 22858 GAACAATACCGTTAGAGTTTCCATTGGTACCAGCGATGTATGCACCAGTAGCACGGATTC 22799 Query 214075 TGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAG 214134 || ||| ||| || || ||||| || | ||| ||||||||||| ||| | ||| || Sbjct 22798 TGTGAATGTTGAGACCAATACCACCAGCATTCTTTGAGATCATGGCACAGATCTTCAAAG 22739 Query 214135 TCTC 214138 | || Sbjct 22738 TGTC 22735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931502478607360