Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2055 150 3e-31 >seq2055 Length=75196 Score = 150 bits (166), Expect = 3e-31 Identities = 338/511 (66%), Gaps = 7/511 (1%) Strand=Plus/Plus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTG 25873 ||||||||| |||||| ||||| | || |||||| | | ||| | | || |||| Sbjct 73217 GCATCAAGAAGAAGGCCGACTGGGCTGTCAAATGGATCCAAGACAAGAACTCCACCTTTG 73276 Query 25874 GCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGG 25933 | || || || || || |||||||| || || ||||| ||| ||| || || || Sbjct 73277 CTCAACGTCTCGTCGCTTTCGCTGCTGTTGAAGGTATCTTCTTCTCCGGCTCCTTCGCCT 73336 Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 ||||||||||||||||| || || |||| |||| || ||| |||||||| |||| Sbjct 73337 CCATCTTCTGGCTCAAGAAGCGTGGTCTCATGGCCGGACTTACCTTCTCCAACGAACTCA 73396 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGC 26053 || | | || ||||||||||||| ||||| || ||||| |||| | | | | || Sbjct 73397 TCTCCCGTGATGAGGGTCTCCACACCGATTTCGCATGCCTTCTCTTCTCTCATCTCAAGC 73456 Query 26054 TCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAG 26112 || | || || |||| | |||| | | |||| | || || || || |||||| Sbjct 73457 ACCGC---CCATC-CAAGCAAGCCGTTCAAGATGTCATTACCGAAGCCGTTGAAATCGAG 73512 Query 26113 AAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATG 26172 | || || ||||||||||| || |||||| Sbjct 73513 CAAGAATTCTTGACCGAGGCTCTTCCTTGTGCTCTCTTGGGCATGAACTCCAACCTCATG 73572 Query 26173 AGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACT 26231 | |||||||| |||| || || || | ||| || || | |||| || || | | Sbjct 73573 AAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTCATGGC-TTTGGGTAACGACAAATT 73631 Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 ||||| | | ||||| |||||||| ||||| ||||| || |||| || |||||||| Sbjct 73632 CTACAAGTCTACCAACCCATTCGACTTCATGGAGAACATCTCCTTGGCTGGTAAGACCAA 73691 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 |||||| || ||||| || || || || ||| Sbjct 73692 CTTCTTCGAGAAGAGAGTTGGTGATTACCAA 73722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928814566101760