Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1456 150 1e-30 seq2210 102 5e-16 >seq1456 Length=91500 Score = 150 bits (166), Expect = 1e-30 Identities = 365/548 (67%), Gaps = 6/548 (1%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 |||||||| ||||| || || || ||| |||||| | | | | | ||| || | | Sbjct 55686 ATTGGTATCGATTTGGGTACCACCTACTCTTGTGTGGGTATCTTCCGTGATGATAGAATC 55627 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| || ||||| |||||||| || | || |||||||| | ||| | || || || Sbjct 55626 GAAATTATCGCCAACGACCAAGGAAACCGTACCACACCATCCTTCGTTGCCTTCACAGAT 55567 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 ||||| | | | || |||||||| || || | |||| || || || | || || Sbjct 55566 ACTGAGCGTTTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCAATCAACACC 55507 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || |||||||| | ||||| || || || || | ||| | || ||| ||||| Sbjct 55506 GTCTTCGATGCTAAGCGTTTGATCGGACGCAAGTTCGCAGATGCTGAGGTTCAAGCTGAT 55447 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629 ||| |||| || || ||||| | | || || || ||| || || | | Sbjct 55446 ATGAAGCATTTCCCATTCAAGGTCGTTGACCGTGCCGGAAAGCCAGTCATCGAGGTCGAG 55387 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | || || | || ||||| |||| ||| |||| ||||| ||| | || | || Sbjct 55386 TTCAAG--GGCGAGAACAAGCAATTCACACCAGAAGAAATCTCTTCCATGATCTTGGTCA 55329 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | |||| | | || || ||| | || || || | || | | || || | || Sbjct 55328 AGATGAGAGAGACTGCTGAGG-CTTACCTCGGTGGAACCGTCAACAACGCCGTCGTCACA 55270 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 |||||||| || || | ||||| ||||||||||| ||||| || || || || || Sbjct 55269 GTTCCAGCTTACTTCACCGATTCCCAACGTCAAGCTACTAAGGACGCTGGTCTCATCGCT 55210 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| || ||| | ||||| || || ||||| || ||||| || ||||||| ||| | Sbjct 55209 GGTCTCAACGTTCTCCGTATCATCAACGAACCTACCGCAGCTGCCATTGCTTACGGTTTG 55150 Query 474869 GATAAGAA 474876 || ||||| Sbjct 55149 GACAAGAA 55142 >seq2210 Length=20483 Score = 102 bits (112), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || | || | || ||||| || || ||| ||||| | || || Sbjct 18231 ACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAGGGT 18172 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 |||| ||| || | |||||||| ||||| || | |||||||||||||| ||||| || Sbjct 18171 TCTGCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCC 18112 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||| || || ||||| || ||| ||||||||||| | | | | || ||| Sbjct 18111 CTCCTTATCCTGGATCTTCGACTTAACATTATCAATAGTATCTGACGATTCTACTTCCAA 18052 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || | ||||| || || ||||| Sbjct 18051 -TGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTG 18013 Score = 95.1 bits (104), Expect = 8e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| | ||| || | ||||| ||| || || | || ||||| | || || Sbjct 17775 ACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGT 17716 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || ||||| || || || || || | |||||||||||| ||||| || || Sbjct 17715 ACGGCCATCCTCGAGTTGTTTGCCGGCGAAGATCAAACGTTGTTGATCGGGAGGGATGCC 17656 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||||||||||||| |||||| || || || || | | | || || Sbjct 17655 TTCCTTGTCTTGAATCTTCGATTTGACGTTGTCGATGGTGTCGGAAGATTCAACCTCGAG 17596 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAAC 480760 |||||| || || || |||||||||||||| Sbjct 17595 GGTAATGGTCTTTCCCGTGAGAGTCTTAAC 17566 Score = 91.5 bits (100), Expect = 1e-12 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| | ||||| | | ||| || | ||||| |||||||| |||||||||||| Sbjct 17960 TTGTAATCCGAAAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGT 17901 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||| || || || ||||| ||||| ||||| || ||| || || || || Sbjct 17900 TGATCAGGTGGGATACCCTCCTTATCTTGGATCTTGGACTTCACATTGTCGATGGTGTCC 17841 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | || | ||| || || || || || ||||| ||||| ||||| ||||| Sbjct 17840 GATGACTCAACCTCCAA-AGTGATTGTCTTCCCAGTGAGGGTCTTGACGAAGATTTG 17785 Score = 89.7 bits (98), Expect = 3e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| ||||| || || || ||||| | ||| ||||| |||||||||||||| ||||| Sbjct 17426 ATCTTCGAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGGTCAGGAGGAATTCCCTCCTT 17367 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| ||||||| ||||| ||||| || | ||||| || || Sbjct 17366 GTCCTGGATCTTGGATTTGACATTGTCAATGGTATCGCTGGATTCGACCTCAAGAGTGAT 17307 Query 480737 AGTTTTACCGGTGA 480750 || || ||||||| Sbjct 17306 GGTCTTTCCGGTGA 17293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268067501805392