Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2078 138 1e-27 >seq2078 Length=24173 Score = 138 bits (152), Expect = 1e-27 Identities = 173/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| || Sbjct 1676 ACACCAATAGGACCAACACCAGGTCCACCACCTCCATGAGGAATACAGAATGTCTTGTGA 1735 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || ||||| || ||||| |||||| |||| ||| | || | ||| ||| Sbjct 1736 AGGTTAAGATGGCACACATCGGCACCAATTTCACCGGGTGAACACAATCCGATCTGAGCA 1795 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || ||||| || | ||||| |||||||||| | |||||| || | |||| | Sbjct 1796 TTCATGTTGGCACCGTCCATGTATACTTGACCACCATGCTGATGAACAATGTCACAT-GC 1854 Query 138363 TGTC-TGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATA 138416 | | ||| | || ||||||||||||| || ||| ||||| ||||| ||| Sbjct 1855 AGCCTTGACTTCTGGTTCAAATACACCAAATGTACTTGGGTATGTGATCATGATA 1909 Score = 123 bits (136), Expect = 3e-23 Identities = 196/281 (70%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 139260 AGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGT 139319 ||||| |||| ||||| || ||||||||||| || ||| || || | | |||||| Sbjct 2822 AGTCCTTCTGGCCCATGGTAGACTGCATAGAATGCACTCATGTTGGCCAATAATGCTTGA 2881 Query 139320 GCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGT 139379 || ||||||| ||||| || || || ||||| | |||||||| ||||||||||||| Sbjct 2882 GCCGTGCAGACATTACTAGTAGCCTTTTCTCTGCGGATATGCTGTTCTCTAGTTTGTAAA 2941 Query 139380 GCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGT 139439 || ||||| ||| || ||| || ||| || ||| | | | || || Sbjct 2942 GCCAATCTCATTGCCTTATCCCCTAATCTATCCTTCGATACACCAATGAGACGTCCTGGA 3001 Query 139440 ATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCC 139499 ||||||||||| |||||||| || ||||| |||||||| ||||| || || || Sbjct 3002 ATCTTTCTCTTGTACTTGTCGCCAACAGCGAAGAAAGCAGCATGTGGACCACCATAACCG 3061 Query 139500 ATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540 | |||| ||||| | ||| | | || | ||||||||| Sbjct 3062 AATGGAACTCCAAAACGTTGAGCATTTCCAAAAGCAATATC 3102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578979553602080