Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1009 246 4e-60 seq2055 116 4e-21 >seq1009 Length=94825 Score = 246 bits (272), Expect = 4e-60 Identities = 1175/1826 (64%), Gaps = 75/1826 (4%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||| || ||||||| ||||| | || | || |||| ||| |||||||||| | Sbjct 22471 TACTTCGGCTTCAAAACACTTGA-ACGATCATACCTTCTACGTCTCGATGGCAAGGTTGC 22529 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| ||||| | ||| ||||||| || || | || || ||||| || || || || Sbjct 22530 AGAACGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATCGA 22589 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAA 75323 || | || ||||| || |||||| | | ||| || | || || | |||| Sbjct 22590 AAGTGCTATCGAAACATATAACTTGATGTCGAACAAGTACTTT-ACACATGCCTCCCCAA 22648 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 | |||||| ||| ||||| ||| | | || | || |||||||| |||| || | Sbjct 22649 CACTCTTCTCTGCGGGTACTCCACAAGCACAACTTTCATCGTGCTTCCTCATCGACATGA 22708 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 ||||||| || | ||||| || | ||| | | | ||||| ||||||||| Sbjct 22709 AGGAGGATAGTATTGATGGTATTTACGACACTTTGAAGATCTGTGCCATGATCTCAAAGA 22768 Query 75444 GGGCTGGGGGTATTGGG------ATGCACA---TCCATGATGTGAGAGCCAATAAATCTC 75494 ||||| |||||||| || |||| ||| || | | || ||| ||| | Sbjct 22769 ATGCTGGTGGTATTGGTCTCAACATTCACAGAATCCGTGCTACTGGTGC--ATACATCGC 22826 Query 75495 GTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACG 75554 || || ||||| | || | |||||| |||| ||||| || || || ||| Sbjct 22827 T-------GGTACCAATGGAAACTCTAACGGTATTGTTCCTATGCTCCGAGTTTTCAACA 22879 Query 75555 CCACAGCGCGCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCATC-GCGGTCT 75608 ||| || | ||||| | |||| || | |||| | || | | || || | Sbjct 22880 ACACTGCCAGATATGTTGACCAAGGTGG---TAACAAGCGTCCTGGTGCTTTTGCTGTTT 22936 Query 75609 ACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTG 75668 || | || ||||||||||| ||| | | ||||||||||| |||| || || ||| Sbjct 22937 ACCTTGAGCCATGGCATGCGGATGTTTTCGAGTTCCTTGATCTACGTAAGAATCATGGTA 22996 Query 75669 ACGAAGAGGCTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATG 75727 | ||||| | ||| || | | |||||||| | || |||||||||| || || |||||| Sbjct 22997 AGGAAGAAGTTCG-TGCACGCGATCTCTTCTACGCCTTGTGGATTCCTGATCTATTCATG 23055 Query 75728 AAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTC 75787 ||||| ||||| || || ||||| |||| | || || || | ||||| | Sbjct 23056 AAGCGAGTTGAAAAGAACGGAGAATGGACTCTCATGTGCCCCAACGAATGTCCAGGCTTG 23115 Query 75788 TCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAG 75846 | || | ||||||||||| || || |||||| || || ||| ||| || Sbjct 23116 GCAGATGTTTATGGTGAGGAGTTCGAGGCTCTCTACGAGGGTTACGAGAAGGCAGGCAAG 23175 Query 75847 AGCCAATGC--GACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGAC 75903 | | || |||| | | || | | | | ||||| | |||||||| || | || || Sbjct 23176 GGTC---GCAAGACTAT-CAAGGCTCAAAAGCTTTGGTACTCTATTCTCGAAGCTCAAAC 23231 Query 75904 GGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAA 75963 ||||| |||| || | ||||||||||| ||||| || ||||||||||| |||||||| Sbjct 23232 CGAGACCGGAAATCCTTTCATGCTTTACAAAGATGCATGCAACAAGAAGAGCAACCAAAA 23291 Query 75964 GAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAA 76023 ||| | || || || ||||| || | ||||| ||||| | |||||| | | Sbjct 23292 GAACCTCGGTACTATTCGAAGCTCCAACTTGTGCACAGAAATCGTGGAGTACTCTGCACC 23351 Query 76024 GGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCA--ATGAA 76081 |||||| ||| || || ||||| || ||||| | |||| | |||| ||||| Sbjct 23352 AGATGAGGTTGCTTGCTGTAACTTGGCTTCTATCGCTTTGCCAACATTCGTCAACATGAA 23411 Query 76082 -GAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAA 76140 ||| | |||| ||| | |||| ||||| || | || ||||| | ||| Sbjct 23412 TGAG---GGAACTTATGACTTCCAAAAGCTTCACGAGGTTGTTCAGGTTGTTGTTAGAAA 23468 Query 76141 TCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAGTCTAATA 76199 | ||| ||||||||| |||| ||||| || | ||| || ||||| ||| Sbjct 23469 CTTGAACAAGATCATTGACATCAATTACTATCCAGTCGCAGA-AGCCAGAAAGAGCAATT 23527 Query 76200 TGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT--TTGTG 76257 | ||||| |||||||| | | | |||||||||||||| || |||| ||| || | | Sbjct 23528 TCCGACATAGACCTATCGCTGTCGGTGTTCAAGGTCTTGCTGATG-CTTTCTTGGCTCTT 23586 Query 76258 CCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCAT 76317 | || | |||| || || ||||||||| | | || | || || || || || Sbjct 23587 CGTCTTC-CATTCGACTCCCCAGAAGCCAAGCACCTCAACATCCAAATTTTCGAGACTAT 23645 Query 76318 GTATCACGCATCCCTGGAGGCGAGTTGT-GAATTGGCTGAAGCCCAAGGTTCCTATGAGA 76376 || ||||| ||| || | || || | || | | | || | || || | Sbjct 23646 CTACCACGC-CGCCTTGACCTCATCCGTCGAGATTGCAAAGGAACTTGGCCCATACGACA 23704 Query 76377 CATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAA 76436 | | | | || ||||| | || | || | || || | ||||||||||| || | | Sbjct 23705 CTTATCAAGGCTCTCCAGTCTCGAAGGGAGAACTCCAATATGATATGTGGG-GTGTTACA 23763 Query 76437 CCAAGCTCA--ACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 76494 || | || | | || ||||| | ||| || ||||||| | | || | || Sbjct 23764 CCTA-CTGATTTGTGGGATTGGGACTCCTTGAAGCAATCCATCAAGCAACACGGAATCCG 23822 Query 76495 TAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATA 76553 |||| || | | ||||| ||||| || || ||| | |||| |||||| | | Sbjct 23823 TAACTCCCTCCTCGTTGCACCCATGCCTACTGCTAGCACATCCCAAATTCTTGGCT-TCA 23881 Query 76554 ATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGT 76613 ||||||| || ||||| ||||| ||||||||||| | | || || || || | Sbjct 23882 ATGAATGTTTCGAACCTTACACCTCAAACATCTACTCCCGTCGTGTTCTTGCCGGAGAAT 23941 Query 76614 TTGTCATTGTCAA-CAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAG 76672 | | || || | | | || |||| ||||| | || ||||||||||| | Sbjct 23942 TCCAAGTCGTTAATCCATGGCTTC-TCAAAGACCTTGTCGATATGGGTCTCTGGTCTGAC 24000 Query 76673 GATATGAAGGA---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATAT 76728 | |||||| | | ||| || ||| ||||| ||||| ||||| ||| | |||| Sbjct 24001 AACATGAAGAACCGTATCATTGCTGA----TGGTGGATCCATCCAAAACATCCCCAATAT 24056 Query 76729 CCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGA--TGTC 76786 |||| ||| |||||| ||||||| || || ||||||||| | || || | Sbjct 24057 TCCAGCTGACATCAAGGCTCTCTACAAGACCGTTTGGGAAATC--TCTCAACGAACAATT 24114 Query 76787 ATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTC 76846 || | ||||| || ||||||||| || || |||||| |||| ||||| | | Sbjct 24115 GTTCAAATGGCTGCTGATCGTGGTGCATTTATCGATCAATCTCAATCAATGAACATTCAC 24174 Query 76847 ATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGG 76906 ||| | ||| || ||| ||| | | ||||||||| | | |||||| ||| Sbjct 24175 ATGAAGGATCCTACAATGGGTAAGATTACATCTATGCATTTTGCTGGTTGGAAATTGGGT 24234 Query 76907 CTCAAAACCGGAATGTACTATCTCCG 76932 | || ||||||||||||||||| || Sbjct 24235 TTGAAGACCGGAATGTACTATCTACG 24260 >seq2055 Length=75196 Score = 116 bits (128), Expect = 4e-21 Identities = 342/519 (66%), Gaps = 20/519 (4%) Strand=Plus/Plus Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCG 65066 || || || || |||||||||| | ||||| | |||||| | | |||| ||| Sbjct 73210 GTTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAAATGGATCCAAGACAAGAACTC- 73268 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 | |||| || | || || | || || || ||| || ||||||||||||||||| || Sbjct 73269 CACCTTTGCTCAACGTCTCGTCGCTTTCGCTGCTGTTGAAGGTATCTTCTTCTCCGGCTC 73328 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 ||| | | || | ||| | |||||||| ||||||||| | || || |||||| || Sbjct 73329 CTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGGCCGGACTTACCTTCTCCAA 73388 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTT----TGCCGTGGAGCTCTTCA 65242 ||||| || ||||| ||||||||||||||| || || |||| | |||||| Sbjct 73389 CGAACTCATCTCCCGTGATGAGGGTCTCCACACCGATTTCGCATGCCTT----CTCTTC- 73443 Query 65243 AGACTTTGCGTAATAGACCCACTACCGAAACTA----TCCACGCCATCGTGAAAGAGGCG 65298 || | | | ||| | | | || | | | || | || | | || || Sbjct 73444 --TCTCATC-TCAAGCACCGCCCATCCAAGCAAGCCGTTCAAGATGTCATTACCGAAGCC 73500 Query 65299 GTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAAC 65358 ||||| || ||| ||| ||| | || || || || ||| |||| | || |||||| Sbjct 73501 GTTGAAATCGAGCAAGAATTCTTGACCGAGGCTCTTCCTTGTGCTCTCTTGGGCATGAAC 73560 Query 65359 TCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG 65418 || | ||| | ||||| |||| || | |||||||||||| | ||||| Sbjct 73561 TCCAACCTCATGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTC-ATGGCTTTGGG 73619 Query 65419 GTGCCACCCATT-TGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGA 65477 | || ||| | || | | || ||||| ||||| ||||| ||||| | | | Sbjct 73620 TAACGACAAATTCTACAAGTCTACCAACCCATTCGACTTCATGGAGAACATCTCCTTGGC 73679 Query 65478 TGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||| |||||||||||||| |||||| ||||||| || || Sbjct 73680 TGGTAAGACCAACTTCTTCGAGAAGAGAGTTGGTGATTA 73718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596550181659520