Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2210 104 4e-17 seq2089 95.1 2e-14 >seq2210 Length=20483 Score = 104 bits (114), Expect = 4e-17 Identities = 168/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCT--CTTTAGAAATAT 193182 |||||| |||||| | | || || |||| ||||| || || | |||| ||| ||| Sbjct 18245 ATTTATTGACCACCACGAAGACGGAGCACCAAGTGCAAGGT-GCTTTCCTTTTGAA-TAT 18188 Query 193183 TATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTT 193242 | || || || | ||||| ||| || || || ||||| ||||| || |||| |||| Sbjct 18187 TGTAATCCGAAAGGGTTCTGCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTT 18128 Query 193243 GATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGG 193302 ||||||| || || || || ||||| || || || | || | ||| ||||||||| | Sbjct 18127 GATCAGGTGGAATGCCCTCCTTATCCTGGATCTTCGACTTAACATTATCAATAGTATCTG 18068 Query 193303 AAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || ||||| | || || || || || || | || || ||||| |||||||| Sbjct 18067 ACGATTCTACTTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 18010 Score = 84.2 bits (92), Expect = 4e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||||| |||| ||| || || | || || || || Sbjct 18017 ATTTGCATACCACCACGGAGACGAAGGACCAAATGTAAGGTCGATTCCTTTTGGATGTTG 17958 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | || | ||| || || || || || ||||| || | | |||||| Sbjct 17957 TAATCCGAAAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGTTGA 17898 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || || || |||||||| || |||| || | ||| || || || || Sbjct 17897 TCAGGTGGGATACCCTCCTTATCTTGGATCTTGGACTTCACATTGTCGATGGTGTCCGAT 17838 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || | ||| || || || || || || || || || || |||||||| Sbjct 17837 GACTCAACCTCCAAAGTGATTGTCTTCCCAGTGAGGGTCTTGACGAAGATTTGCAT 17782 >seq2089 Length=24093 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||| | || | ||| || | ||| |||||||| || || |||| | Sbjct 11780 ATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGC 11721 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| ||||| || ||||| || || || || || |||| || | ||| || || Sbjct 11720 TGTTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTG 11661 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || ||||||||||| || || || || ||||| || || || || || || || || ||| Sbjct 11660 TCCGAAGACTCAACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGC 11601 Query 193359 AT 193360 || Sbjct 11600 AT 11599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899625116249280