Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2210 140 6e-28 >seq2210 Length=20483 Score = 140 bits (154), Expect = 6e-28 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT--CTTTAGAGATATTATAATCA 192366 |||||| | |||||| | || || || || || || | |||| || ||||| ||||| Sbjct 18237 ACCACCACGAAGACGGAGCACCAAGTGCAAGGT-GCTTTCCTTTTGA-ATATTGTAATCC 18180 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| ||||| || || || |||||||| |||| |||||||||||| Sbjct 18179 GAAAGGGTTCTGCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGT 18120 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || || || |||||| |||| ||||||||||||| Sbjct 18119 GGAATGCCCTCCTTATCCTGGATCTTCGACTTAACATTATCAATAGTATCTGACGATTCT 18060 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||||| || ||||| || || || | ||| || ||||| Sbjct 18059 ACTTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 18010 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || |||||||| || | || || ||| || ||||| Sbjct 18011 ATACCACCACGGAGACGAAGGACCAAATGTAAGGTCGATTCCTTTTGGATGTTGTAATCC 17952 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| ||||| || |||||||||||||| | | |||||||||||| Sbjct 17951 GAAAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGTTGATCAGGT 17892 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || || ||||| || | || || || || Sbjct 17891 GGGATACCCTCCTTATCTTGGATCTTGGACTTCACATTGTCGATGGTGTCCGATGACTCA 17832 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| || || || ||||| | || || | || || ||||| Sbjct 17831 ACCTCCAAAGTGATTGTCTTCCCAGTGAGGGTCTTGACGAAGATTTGCAT 17782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984447154055400