Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq46 125 2e-23 seq2055 109 2e-18 seq2042 84.2 6e-11 >seq46 Length=58331 Score = 125 bits (138), Expect = 2e-23 Identities = 385/589 (65%), Gaps = 16/589 (3%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| ||| ||| | ||| || ||| ||||||| || | ||| ||| | Sbjct 8172 ATGAGTCCACAAATATCACAGATATGAACTCTGAAAGCATCCGAAACCTCAAATAATCTC 8113 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| | ||||||||| ||||||||||||||||| ||||| || |||||| Sbjct 8112 TCCTTCAAGAAAGCACTTGCACCGTGAGAAATCATACAATCACGTTCCATCTCTCCGAAA 8053 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 |||||||||||||| | || | ||| ||| |||| || | || ||| | | ||| Sbjct 8052 CGAAGACCACCATCTCTGGCACGACCTTCGACAGGTTGTCTGGTTAGAATCTGTACCGGA 7993 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || ||| ||| ||| ||| || | ||||| || | ||| ||||| ||| | Sbjct 7992 CCTCTGGCACGGGCATGGATCTTGTCGTCGACCATGTGGCGCAAACGTTGGTAATATGTG 7933 Query 251647 GGACCGATGAAGA--TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTT 251704 ||||| | ||||| || | | ||| | ||||| | | | ||||| | | Sbjct 7932 GGACCAAGGAAGACTTGGGCCA--TCATCTTACGACCAGTATGGCCATGGTACATGATCT 7875 Query 251705 CGTTTCCATTAGATTCATAACCAAGT---TTCTGTAGCTCTGAAGCAATATCACCAATCT 251761 || ||| ||| | || ||| || |||||| || | ||| || Sbjct 7874 CGAAACCACGAGAATGGTAGCCATGTGCACGGAGTAGCTTGGAGACTGAATCGACA---G 7818 Query 251762 TGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTA 251821 ||| || | |||| || | || || | ||| || | || | | || || | | Sbjct 7817 TGACTTCGGTAAACGGTGTAGCATCACCCTCAAGTCCACGTAGAGTGGAAACCTTACTCA 7758 Query 251822 AAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGA 251881 | | ||| ||| || || || ||||||||| |||||||| ||||| ||||||| Sbjct 7757 ATTGGCACTCAATCAAATGCGCAATTGTCATACGAGATGGAATAGCGTGGGGGTTGATGA 7698 Query 251882 TGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGT-- 251938 | | ||||| | || || |||||| ||||| |||| || | ||| |||| Sbjct 7697 TAAGATCGGGAACAACACCTTCTCTAGTGAACGGCATGTCCTGTTGC---ATATATGTAA 7641 Query 251939 TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | || ||||||||||| ||||||||||| ||| ||||| |||||||| Sbjct 7640 TACCGATAGTTCCCTTCTGTCCGTGACGTGAAGCAAACTTGTCACCAAT 7592 >seq2055 Length=75196 Score = 109 bits (120), Expect = 2e-18 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| || || ||||| | ||||||||| | ||||||||||| |||||| | | Sbjct 73211 TTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAAATGGATCCAAGACAAGAACTCCA 73270 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||||| |||||||| ||||| |||| || || || || || ||| || | | Sbjct 73271 CCTTTGCTCAACGTCTCGTCGCTTTCGCTGCTGTTGAAGGTATCTTCTTCTCCGGCTCCT 73330 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || ||| || || ||||| || ||||||||| | | | ||||| || || |||| Sbjct 73331 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGGCCGGACTTACCTTCTCCAACG 73390 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 |||| || || | || |||| || |||||||| || || Sbjct 73391 AACTCATCTCCCGTGATGAGGGTCTCCACACCGATTTCGC 73430 >seq2042 Length=138053 Score = 84.2 bits (92), Expect = 6e-11 Identities = 201/302 (67%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 289035 AGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAA 289094 ||| || | ||||||||||||||| | || || || | | ||| ||| | Sbjct 11220 AGCGTCCAGTTCGTCAATGAAAATAATTGCAGGCGATTTGCTTTTTGCAGCACTAAAAAG 11279 Query 289095 TTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATAC 289154 ||||| ||| || ||| |||| || ||||| || || | |||||| | | || | Sbjct 11280 TTCTCGTACTCGTTTTGCACCAACTCCGACATAGATCTCGTCGAATTCACTACCAGACAT 11339 Query 289155 TTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGT 289214 || ||||| ||| || ||||| || || || | |||| | || ||||| || Sbjct 11340 GAAAAAGAATGGAACACCAGCCTCGCCAGCAACGGCACGAGCCAACAAAGTTTTACCAGT 11399 Query 289215 TCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT--ATAT 289272 ||||||||| || | | | || |||||||| | |||| | || ||| || | Sbjct 11400 TCCAGGTGGGCCAACCAGCAAGACACCCTTTGGGAGTTTTCCACC--GAGAGTTGAGAAC 11457 Query 289273 TTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACAT 289332 || || ||| |||| || || ||||| | ||| | |||||||| |||||| || ||||| Sbjct 11458 TTTTCCGGGTTCTTCAAGAAATCTACGAGTTCTTGAAGTTCATCTTTTGCTTCGTCACAG 11517 Query 289333 CC 289334 || Sbjct 11518 CC 11519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471768494645548