Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1927 116 5e-20 seq2055 102 1e-15 >seq1927 Length=80544 Score = 116 bits (128), Expect = 5e-20 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || |||||||| ||||| |||||| | || || ||| |||| |||||| |||| ||||| Sbjct 39122 GCTGCCAACTATCTCGATATCAAGGCCCTCCTAGATGTTGGATGCAAGACTGTTGCCAAT 39181 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||| ||||| || ||||| |||||||| ||||| ||||||| Sbjct 39182 ATGATCAAGGGAAAGTCTCCAGAGGAAATCCGCAAAACCTTCAACATCA 39230 >seq2055 Length=75196 Score = 102 bits (112), Expect = 1e-15 Identities = 132/179 (74%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 869194 GATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 869253 ||| | ||||||| |||| || |||| |||||| || |||||||||||||| ||||| Sbjct 73398 GATGAGTTCGTTGGAGAAGGTAAGTCCGGCCATGAGACCACGCTTCTTGAGCCAGAAGAT 73339 Query 869254 GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTC 869313 || | ||| ||| ||||| ||||| || || || || || || ||| ||| || | Sbjct 73338 GGAGGCGAAGGAGCCGGAGAAGAAGATACCTTCAACAGCAGCGAAAGCGACGAGACGTTG 73279 Query 869314 GGCAAAGGTGTCGAGGCCCT-CCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371 ||||||||| ||| | | |||| |||||| || | |||||||||||||| ||| Sbjct 73278 AGCAAAGGTG--GAGTTCTTGTCTTG--GATCCATTTGACAGCCCAGTCGGCCTTCTTC 73224 Score = 93.3 bits (102), Expect = 5e-13 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || | | |||||| ||||||||||| || | | ||||| Sbjct 73727 GCCTTTTGGTAATCACCAACTCTCTTCTCGAAGAAGTTGGTCTTACCAGCCAAGGAGATG 73668 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| || ||| || | | | | Sbjct 73667 TTCTCCATGAAGTCGAATGGGTTGGTAGACTTGTAGAATTTGTCGTTACCCAAAGCCATG 73608 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || || || || || ||||||||||| || ||||||| || ||||||||| | | Sbjct 73607 AGGAGACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGAGTTCATGCCCAAG 73548 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG 868924 || || || || | |||| ||| || |||| |||||| || ||||| ||| Sbjct 73547 AGAGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTTCAACGGCTTCG 73494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106925503565468