Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2089 129 4e-25 seq2210 104 2e-17 seq1994 91.5 1e-13 >seq2089 Length=24093 Score = 129 bits (142), Expect = 4e-25 Identities = 159/215 (74%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | ||| |||||| || ||||| ||||| || ||| |||| |||| || Sbjct 11807 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCG 11748 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||||||||||||||||| ||| || ||||| | || | ||||||||||| | Sbjct 11747 AGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATTCCCTCCTTGTCCTGG 11688 Query 34889 ATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGT 34944 || || ||||| || | ||||| || | ||| || || | ||| ||||| Sbjct 11687 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGT 11632 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 || |||||||||||||| || ||||||||||||| Sbjct 11631 TTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGA 11597 >seq2210 Length=20483 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || ||||||| ||||| ||| ||||||||| ||||| || || || || | || || Sbjct 17768 CTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTACGGCCA 17709 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || ||||| || ||||||||||||| ||||| || || | || | || |||||| Sbjct 17708 TCCTCGAGTTGTTTGCCGGCGAAGATCAAACGTTGTTGATCGGGAGGGATGCCTTCCTTG 17649 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || ||||||| | || | || | || || || | ||| ||| Sbjct 17648 TCTTGAATCTTCGATTTGACGTTGTCGATGGTGTCGGAAGATTCAACCTCGAGGGTAATG 17589 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAA 34967 |||||||||||||| ||||| |||| Sbjct 17588 GTCTTTCCCGTGAGAGTCTTAACAA 17564 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || ||||||| ||| | || ||||||||| ||||| || || | | |||| || Sbjct 17485 CTGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAAGGTGCGACCA 17426 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || ||||| || |||||||| |||| || || ||||| | || | ||||||||| Sbjct 17425 TCTTCGAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGGTCAGGAGGAATTCCCTCCTTG 17366 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || |||||| | || | || ||| ||||| |||| || ||| Sbjct 17365 TCCTGGATCTTGGATTTGACATTGTCAATGGTATCGCTGGATTCGACCTCAAGAGTGATG 17306 Query 34943 GTCTTTCCCGTGA 34955 |||||||| |||| Sbjct 17305 GTCTTTCCGGTGA 17293 >seq1994 Length=27662 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/186 (72%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || ||||| || || || || | || | || |||| ||||||||| ||||||| Sbjct 3889 CCTTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCCTCCAATTGCTTTCCAGCGAAGA 3948 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||||| || || | || | ||||||||||| | || || ||||| || Sbjct 3949 TCAAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 4005 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || |||||| |||| ||| |||||||| ||||| |||||||| Sbjct 4006 -TGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTG 4064 Query 34964 ACAAAG 34969 || ||| Sbjct 4065 ACGAAG 4070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325682463731876