Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05]
2,604 sequences; 40,732,201 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq2210 98.7 8e-16
>seq2210
Length=20483
Score = 98.7 bits (108), Expect = 8e-16
Identities = 145/203 (71%), Gaps = 2/203 (1%)
Strand=Plus/Minus
Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634
|| ||||| ||||| || || || || || ||||| ||||| | | || || |||
Sbjct 17765 AGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTACGGCCATCC 17706
Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694
|||||||||||||| || | ||||| | ||| ||||| || || || || || ||||||
Sbjct 17705 TCGAGTTGTTTGCCGGCGAAGATCAAACGTTGTTGATCGGGAGGGATGCCTTCCTTGTCT 17646
Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| ||| || | |||||| | || | ||||| ||| ||| || || || || || ||
Sbjct 17645 TG-AATCTTCGATTTGACGTTGTCGATGGTGTCGGAAGATTCAACCTCGAGGGTAATGGT 17587
Query 29754 TTTGCCAGTTAAGGTTTTAACAA 29776
|| || || | || |||||||
Sbjct 17586 CTTTCCCGTGAGAGTCTTAACAA 17564
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/189 (71%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAGAATC 29633
|| ||||| || || || || || || || ||||| ||||| | ||| ||||||| |||
Sbjct 17482 AGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAA-GGTGCGACCATC 17424
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|||||||||||||| || | ||||| | || || || || ||||| ||||| |||||
Sbjct 17423 TTCGAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTC 17364
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || ||||||| | || | || || ||| || |||||||| || ||
Sbjct 17363 CTGGATCTTGGATTTGACATTGTCAATGGTATCGCTGGATTCGACCTCAAGAGTGATGGT 17304
Query 29754 TTTGCCAGT 29762
|| || ||
Sbjct 17303 CTTTCCGGT 17295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385206974587164
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |