Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2306 140 2e-27 seq1456 107 1e-17 seq338 86.0 5e-11 >seq2306 Length=17745 Score = 140 bits (154), Expect = 2e-27 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| ||||||||| || | |||||||||||||||||||||||||| | ||||| ||| Sbjct 11782 GGTAAGGAAGGTCGTCTTCGTGGAAATTTGATGGGAAAGCGTGTCGACTTTTCTGCTCGT 11841 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || ||||||||| |||||| ||| || ||||| |||| ||||||||||||| | ||| Sbjct 11842 ACTGTTATTACTGGTGATCCCAATCTTTCTCTCGATGAGGTTGGTGTTCCTCGAAGCATT 11901 Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGATTATTTGACTCAA 432467 |||| || ||| || | || | || || || || || ||| | ||| ||| Sbjct 11902 GCGAGAATTCTCACATACCCAGAGACCGTTACGCCACTGAACATCGATAAATTGCATCAG 11961 Query 432468 TTAGTGAAAAATGGT--AAAAGAGTATATCCAGGTGCCAATTTTGTAATC 432515 | || || |||||| | | ||| |||| |||||||| | ||| ||| Sbjct 11962 CTTGTTAAGAATGGTCCAGATGAG--CATCCTGGTGCCAAATATGTCATC 12009 Score = 89.7 bits (98), Expect = 4e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 || ||||||||||| | ||||||||||||||||||| | ||| |||| || |||| || Sbjct 13231 GAGTTTTTCTTCCACGCAATGGCTGGTCGTGAAGGTTTGATTGATACCGCAGTTAAGACC 13290 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 || || |||||||| |||||| | |||||||| ||||| ||| | | | Sbjct 13291 GCAGAAACTGGTTACATTCAACGTCGTCTTGTCAAAGCTCTTGAGGATGTCATGGCTAAG 13350 Query 435253 TATGATGGTACAGT 435266 ||||||||||| || Sbjct 13351 TATGATGGTACTGT 13364 >seq1456 Length=91500 Score = 107 bits (118), Expect = 1e-17 Identities = 246/368 (67%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || || |||||||| | ||| || ||||| ||||||||||| || || | | |||||| Sbjct 53318 ATTCCGTTGGCATCAAGATCGAAAGTGACCTCAATTTGAGGAACACCACGTGGTGCAGGT 53377 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | || | |||| | || || || || ||| || || ||| Sbjct 53378 GGGATACCAGTGAGCTCGAACTTGCCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 53437 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||||| | |||||| || ||| ||| || || || | || | ||| || Sbjct 53438 CCCTCGAAGACTTGGATGAGGACACCAGGTTGGTTGTCAGAGAAGGTAGAAAAGACCTCA 53497 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || || || || |||||||| || | |||||||| |||||||| Sbjct 53498 GACTTCTTGGTTGGGATAGTGGTGTTTCTTGGGATGAGCTTGGTCATCTGTCCACCAGCA 53557 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738 || || | ||| ||||| | || | |||||| | |||| || | || | | || Sbjct 53558 GTCTCGATACCGAGAGACAATGGCGCGACATCGAGAAGGAGGATCTCGTTGGTGGACTTG 53617 Query 281739 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | | || | |||| ||||| || || || | |||||||||||||||||||| ||| Sbjct 53618 GAGGAGGTGTCACCAGAGAGAATGGCAGCCTGGACGGCAGCACCATATGCAACAGCCTCA 53677 Query 281798 TCAGGATT 281805 ||||| || Sbjct 53678 TCAGGGTT 53685 >seq338 Length=8655 Score = 86.0 bits (94), Expect = 5e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 131177 GTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATT 131236 ||||| || ||||| ||||||||||||||||| | || | | | || || |||| ||| Sbjct 2338 GTAGTTGCAACAATTGCATTTGGTATGGGTATCGACAAGCAGAACGTGCGATTTGTCATT 2279 Query 131237 CATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGT 131296 ||||| | |||||| | | | ||||||||||| || |||| ||| |||| ||||| Sbjct 2278 CATTATTGCCTTCCCAAAACTTTAGAAGGTTATTACCAGGAAACTGGGCGAGCTGGTCGA 2219 Query 131297 GATGG 131301 || || Sbjct 2218 GACGG 2214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740502554604504