Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2210 147 4e-30 >seq2210 Length=20483 Score = 147 bits (162), Expect = 4e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||||| || ||| || || ||||| ||||| || || |||| || Sbjct 18225 ACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAGGGTTCTGCC 18166 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || | || ||||| |||||||| | || ||||||||| || || || || ||||| Sbjct 18165 ATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCCTCCTT 18106 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| || ||||| | || ||||| ||||| ||||| | |||||||||||| || || Sbjct 18105 ATCCTGGATCTTCGACTTAACATTATCAATAGTATCTGACGATTCTACTTCCAATGTAAT 18046 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| ||||| || ||||| Sbjct 18045 GGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 18010 Score = 116 bits (128), Expect = 7e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||| || ||||| || ||||| || || ||||| || || | | || || Sbjct 17765 AGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTACGGCCATCC 17706 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || |||||||| || || ||||| | | ||||||||| ||||| || |||||||| ||| Sbjct 17705 TCGAGTTGTTTGCCGGCGAAGATCAAACGTTGTTGATCGGGAGGGATGCCTTCCTTGTCT 17646 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 |||||||| | ||| || || || || || || || ||| || || | || || ||| Sbjct 17645 TGAATCTTCGATTTGACGTTGTCGATGGTGTCGGAAGATTCAACCTCGAGGGTAATGGTC 17586 Query 82779 TTGCCTGTCAACGTCTTTACAA 82800 || || || | ||||| |||| Sbjct 17585 TTTCCCGTGAGAGTCTTAACAA 17564 Score = 111 bits (122), Expect = 3e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || || | || ||||| || || || || ||||| | Sbjct 18010 TACCACCACGGAGACGAAGGACCAAATGTAAGGTCGATTCCTTTTGGATGTTGTAATCCG 17951 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || | || || ||||||||||| || | ||||||||| || | Sbjct 17950 AAAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGTTGATCAGGTG 17891 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||||||||| ||||| | || ||||| || || || || | || | Sbjct 17890 GGATACCCTCCTTATCTTGGATCTTGGACTTCACATTGTCGATGGTGTCCGATGACTCAA 17831 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || ||||| || || | ||||| || || || ||||| Sbjct 17830 CCTCCAAAGTGATTGTCTTCCCAGTGAGGGTCTTGACGAAGATTTGCAT 17782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981794442562756