Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1009 194 4e-44 seq2055 98.7 2e-15 >seq1009 Length=94825 Score = 194 bits (214), Expect = 4e-44 Identities = 528/799 (66%), Gaps = 11/799 (1%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || || || |||||||| |||||||| | || | || ||| || ||||| || | Sbjct 22471 TACTTCGGCTTCAAAACACTTGAACGATCATACCTTCTACGTCTCGATGGCAAGGTTGCA 22530 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| ||||| ||| | | |||||||| |||||||||| || ||||||| || Sbjct 22531 GAACGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATCGAA 22590 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 || ||| ||| ||| | | | || ||| | || ||||| | || || Sbjct 22591 AGTGCTATCGAAACATATAACTTGATGTCGAACAAGTACTTTACACATGCCTCCCCAACA 22650 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543 || || || || ||| || |||| | | || ||||| || | | || || Sbjct 22651 CTCTTCTCTGCGGGTACTCCACAAGCACAACTTTCATCGTGCTTCCTCATCGACATGAAG 22710 Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTTCTAAAAA 110602 || ||| |||||| |||||||| || || || |||| ||| | || || || || Sbjct 22711 GAGGATAGTATTGATGGTATTTACGACACT-TTGAAGATCTGTGCCATGATCTCAAAGAA 22769 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 |||| || |||||| | || |||| || || | | || ||| | ||||| Sbjct 22770 TGCTGGTGGTATTGGTCTCAACATTCACAGAATCCGTGCTACTGGTGCATACATCGCTGG 22829 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || || || | || ||||||| ||| | |||| |||||| ||||||| | Sbjct 22830 TACCAATGGAAACTCTAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACTGCCAG 22889 Query 110723 ATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 |||||| | ||||||||| ||| | ||| | |||||| | || || || || || Sbjct 22890 ATATGTTGACCAAGGTGGTAACAAGCGTCCTGGTGCTTTTGCTGTTTACCTTGAGCCATG 22949 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAG 110839 |||| | ||| | || || ||| | || || ||||| ||||| || |||||| | Sbjct 22950 GCATGCGGATGTTTTCGAGTTCCTTGATCTACGTAAGAATCATGGTAAGGAAGAAGTTCG 23009 Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899 ||||| ||| | || || || |||||||| | ||| |||||||||| || ||| || | Sbjct 23010 TGCACGCGATCTCTTCTACGCCTTGTGGATTCCTGATCTATTCATGAAGCGAGTTGAAAA 23069 Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCG-TTCTCCTGGTCTATCTGATGTATATG 110958 || || ||| |||| ||||| || || || | ||| || | | ||||| |||| Sbjct 23070 GAACGGAGAATGGACTCTCATGTG-CCCCAACGAATGTCCAGGCTTGGCAGATGTTTATG 23128 Query 110959 GAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAA-ACAA 111017 | | ||||| || | || ||||| || || || | ||||||| |||||| || | Sbjct 23129 GTGAGGAGTTCGAGGCTCTCTACGAGGGTTACGAGAAGGCAGGCAAGGGTCGCAAGACTA 23188 Query 111018 ATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCC 111076 || | |||||| | ||||||| | || || ||| | ||| || || |||| ||| Sbjct 23189 --TCAAGGCTCAAAAGCTTTGGTACTCTATTCTCGAAGCTCAAACCGAGACCGGAAATCC 23246 Query 111077 TTATATTTTGTATAAAGAT 111095 || || | || |||||| Sbjct 23247 TTTCATGCTTTACAAAGAT 23265 >seq2055 Length=75196 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 ||||| || || ||||| || || |||||| | |||||||| ||||| | | | | Sbjct 73211 TTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAAATGGATCCAAGACAAGAACTCCA 73270 Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906 ||| || | | || || ||||| ||| |||||||||||| ||||| || || | | Sbjct 73271 CCTTTGCTCAACGTCTCGTCGCTTTCGCTGCTGTTGAAGGTATCTTCTTCTCCGGCTCCT 73330 Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966 || | ||||| ||||| ||||||||||| | ||| | ||||| | || ||||| Sbjct 73331 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGGCCGGACTTACCTTCTCCAACG 73390 Query 131967 AATTCATCTCGAGAGATGA 131985 || ||||||| | ||||| Sbjct 73391 AACTCATCTCCCGTGATGA 73409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186773203474444