Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2089 111 1e-19 seq2210 93.3 3e-14 seq1994 86.0 4e-12 >seq2089 Length=24093 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | |||||||||||| || |||||| ||| ||||| |||||||| |||| Sbjct 11827 CACCACCACGGAGACGTAACACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGG 11768 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || || | ||| |||||||| || ||||| ||||| || || | | Sbjct 11767 AAAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTG 11708 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || || | | |||| ||| | |||||| || || Sbjct 11707 GGATTCCCTCCTTGTCCTGGATCTT-GGACTTGACATTGTCGATGGTGTCCGAAGACTCA 11649 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| ||||| || || | || || || ||||||||||| Sbjct 11648 ACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 11599 >seq2210 Length=20483 Score = 93.3 bits (102), Expect = 3e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || ||| || || |||||||||||||||||||| || | || || Sbjct 17762 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTACGGCCATCCTCG 17703 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||| ||||| || |||||||| || ||||| | || | ||||| ||||| | Sbjct 17702 AGTTGTTTGCCGGCGAAGATCAAACGTTGTTGATCGGGAGGGATGCCTTCCTTGTCTTGA 17643 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| | || || | ||| | ||||||| ||||| || || | || || || || Sbjct 17642 ATCTTC-GATTTGACGTTGTCGATGGTGTCGGAAGATTCAACCTCGAGGGTAATGGTCTT 17584 Query 33720 ACCTGTTAACGTTTTTACAA 33739 || || | || || |||| Sbjct 17583 TCCCGTGAGAGTCTTAACAA 17564 Score = 86.0 bits (94), Expect = 4e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || ||||| ||| || || |||||||||||| | ||||| | || || Sbjct 17479 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAAGGTGCGACCATCTTCG 17420 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||| ||||| |||||||||||||| || || | || | || || ||||| Sbjct 17419 AGTTGTTTGCCGGCGAAAATCAAACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGG 17360 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || | || |||| ||| | ||| ||||| ||||| || |||| ||||| || || Sbjct 17359 ATCTT-GGATTTGACATTGTCAATGGTATCGCTGGATTCGACCTCAAGAGTGATGGTCTT 17301 Query 33720 ACCTGT 33725 || || Sbjct 17300 TCCGGT 17295 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||||| || || ||||| ||||||||||| || Sbjct 18009 ACCACCACGGAGACGAAGGACCAAATGTAAGGTCGATTCCTTTTGGATGTTGTAATCCGA 17950 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || ||||| || || || ||||| || | ||| || ||||| | || Sbjct 17949 AAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGTTGATCAGGTGG 17890 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || || || || || ||| |||| ||| | |||||| ||| || | Sbjct 17889 GATACCCTCCTTATCTTGGATCTTGGACTTC-ACATTGTCGATGGTGTCCGATGACTCAA 17831 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || ||||| |||||| Sbjct 17830 CCTCCAAAGTGATTGTCTTCCCAGTGAGGGTCTTGACGAAGATTTGCATA 17781 >seq1994 Length=27662 Score = 86.0 bits (94), Expect = 4e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 ||||| ||||||||||| ||||| || ||| |||| |||||||| ||||| || || ||| Sbjct 3891 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCCTCCAATTGCTTTCCAGCGAAGATC 3950 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 ||||| || ||||| | || | || || ||||| || || | | |||| ||| Sbjct 3951 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTT-GGACTTGACATTGTC 4009 Query 33682 -ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | ||||||| || || || |||| ||||| || || || || | || || || || Sbjct 4010 GATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 4069 Query 33741 G 33741 | Sbjct 4070 G 4070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328693568167680