Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2210 93.3 1e-13 seq2089 89.7 1e-12 seq229 84.2 5e-11 >seq2210 Length=20483 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || || || | || || ||| ||| ||||| |||| Sbjct 17569 AAGACTCTCACGGGAAAGACCATTACCCTCGAGGTTGAATCTTCCGACACCATCGACAAC 17628 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || || ||||||||||| || ||||| || || || ||| | | |||||| Sbjct 17629 GTCAAATCGAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAACAACGTTTGATCTTC 17688 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || | || ||||| | || | ||||||||||| ||||||| |||||| Sbjct 17689 GCCGGCAAACAACTCGAGGATGGCCGTACACTCTCCGATTACAACATCCAGAAGGAGTCT 17748 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | || | |||||||| Sbjct 17749 ACCCTTCACTTGGTCCTCAGACTTCG 17774 >seq2089 Length=24093 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || ||||| ||||| | || || || ||| ||| Sbjct 11602 CAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCGGAC 11661 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || ||||| || ||| || Sbjct 11662 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACCAACAG 11721 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||||||||||||||| | |||||||| | || | |||| |||||| || Sbjct 11722 CGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGACTACAACATC 11781 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 || || ||||| ||||| ||| | || || Sbjct 11782 CAAAAGGAGTCCACTCTCCACTTGGTGTT 11810 >seq229 Length=55923 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 101536 TTCAGCCACCTTCCGGAGGTAATTGTGCCTCTTCTCCTTTCTTAATCTCTCGAAACGAAG 101595 ||| || ||||| || | ||| ||||| | |||||||| | | | | |||||||| Sbjct 24411 TTCGGCAACCTTTCGAACGTAGTTGTGACGCTTCTCCTCACGAAGACGAGCAAAACGAAG 24470 Query 101596 GGCAGATTGTCCTCCCCTCCCGTGTTTCTTTGGCAAAGAGACGTCAAAATTATGAAGAAT 101655 |||||||||||| || | ||||| |||||||||||| ||| ||| || |||| ||| Sbjct 24471 GGCAGATTGTCCACCACGACCGTGCTTCTTTGGCAAATCGACAGAAAACTTGTGAACAAT 24530 Query 101656 TTTCTTGGTGTTCCCA 101671 | ||||||| ||| Sbjct 24531 ATCTCTGGTGTTTCCA 24546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181781370026284