Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2210 82.4 7e-11 seq1009 82.4 7e-11 >seq2210 Length=20483 Score = 82.4 bits (90), Expect = 7e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 25199 ACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAA 25258 |||||||| | ||||| | || |||||| ||| |||||| || || | || ||| Sbjct 17295 ACCGGAAAGACCATCACTCTTGAGGTCGAATCCAGCGATACCATTGACAATGTCAAATCC 17354 Query 25259 AAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAA 25318 || || || || ||||| || || || || || || | | |||| || ||||||| Sbjct 17355 AAGATCCAGGACAAGGAGGGAATTCCTCCTGACCAACAGCGTTTGATTTTCGCCGGCAAA 17414 Query 25319 CAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCAC 25371 ||||||||||||| | | | | ||||||||||| || || || || || || Sbjct 17415 CAACTCGAAGATGGTCGCACCTTGAGCGATTACAACATCCAGAAGGAGTCTAC 17467 >seq1009 Length=94825 Score = 82.4 bits (90), Expect = 7e-11 Identities = 178/260 (68%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 138144 GTTGAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCACA-ATCGTTGAGAGTTCTAT 138202 |||||| || || || || | | || || ||||||||||| ||| || | ||| | Sbjct 22791 GTTGAGACCAATACCACCAGCATTCTTTGAGATCATGGCACAGATC-TTCAAAGTGTCGT 22733 Query 138203 AGATGCCGTTTATGCTGTCTTCCTGGATGTTGAGTAGATAACACGACGACATTTGAGGCA 138262 | || || | || || || |||| |||| || || | ||||| || | ||| | | Sbjct 22732 AAATACCATCAATACTATCCTCCTTCATGTCGATGAGGAAGCACGATGAAAGTTGTG-CT 22674 Query 138263 TTTTCA-TGCCAGCCGAGAATAGAGTGGGACTAGCGTGGGTAAA---CATTTTCGAGCGC 138318 | | | | || || ||||| || || || || || ||||| | | ||||| | Sbjct 22673 TGTGGAGTACCCGCAGAGAAGAGTGTTGGGGAGGCATGTGTAAAGTACTTGTTCGA---C 22617 Query 138319 ATCAATCTATATGACTCGATCGCACTCTCGATATCATCACCATGAATCTGAAGAGCGACA 138378 ||||| |||||| ||||| ||||| |||||||||||||| ||||| || || ||| Sbjct 22616 ATCAAGTTATATGTTTCGATAGCACTTTCGATATCATCACCGTGAATACCAACGGCAACA 22557 Query 138379 CGCATCAGCATGTGTTGAGG 138398 ||||| | ||| ||||| || Sbjct 22556 CGCATGATCATTTGTTGTGG 22537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445079912177280