Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05]
2,604 sequences; 40,732,201 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq2210 82.4 7e-11
seq1009 82.4 7e-11
>seq2210
Length=20483
Score = 82.4 bits (90), Expect = 7e-11
Identities = 122/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 25199 ACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAA 25258
|||||||| | ||||| | || |||||| ||| |||||| || || | || |||
Sbjct 17295 ACCGGAAAGACCATCACTCTTGAGGTCGAATCCAGCGATACCATTGACAATGTCAAATCC 17354
Query 25259 AAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAA 25318
|| || || || ||||| || || || || || || | | |||| || |||||||
Sbjct 17355 AAGATCCAGGACAAGGAGGGAATTCCTCCTGACCAACAGCGTTTGATTTTCGCCGGCAAA 17414
Query 25319 CAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCAC 25371
||||||||||||| | | | | ||||||||||| || || || || || ||
Sbjct 17415 CAACTCGAAGATGGTCGCACCTTGAGCGATTACAACATCCAGAAGGAGTCTAC 17467
>seq1009
Length=94825
Score = 82.4 bits (90), Expect = 7e-11
Identities = 178/260 (68%), Gaps = 10/260 (4%)
Strand=Plus/Minus
Query 138144 GTTGAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCACA-ATCGTTGAGAGTTCTAT 138202
|||||| || || || || | | || || ||||||||||| ||| || | ||| |
Sbjct 22791 GTTGAGACCAATACCACCAGCATTCTTTGAGATCATGGCACAGATC-TTCAAAGTGTCGT 22733
Query 138203 AGATGCCGTTTATGCTGTCTTCCTGGATGTTGAGTAGATAACACGACGACATTTGAGGCA 138262
| || || | || || || |||| |||| || || | ||||| || | ||| | |
Sbjct 22732 AAATACCATCAATACTATCCTCCTTCATGTCGATGAGGAAGCACGATGAAAGTTGTG-CT 22674
Query 138263 TTTTCA-TGCCAGCCGAGAATAGAGTGGGACTAGCGTGGGTAAA---CATTTTCGAGCGC 138318
| | | | || || ||||| || || || || || ||||| | | ||||| |
Sbjct 22673 TGTGGAGTACCCGCAGAGAAGAGTGTTGGGGAGGCATGTGTAAAGTACTTGTTCGA---C 22617
Query 138319 ATCAATCTATATGACTCGATCGCACTCTCGATATCATCACCATGAATCTGAAGAGCGACA 138378
||||| |||||| ||||| ||||| |||||||||||||| ||||| || || |||
Sbjct 22616 ATCAAGTTATATGTTTCGATAGCACTTTCGATATCATCACCGTGAATACCAACGGCAACA 22557
Query 138379 CGCATCAGCATGTGTTGAGG 138398
||||| | ||| ||||| ||
Sbjct 22556 CGCATGATCATTTGTTGTGG 22537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445079912177280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |