Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2055 96.9 5e-14 >seq2055 Length=75196 Score = 96.9 bits (106), Expect = 5e-14 Identities = 141/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 ||||||||||| | |||||| || || || || || || ||| || ||| || || Sbjct 72920 GACGACGAGCGTTACTTCATCTCCCATGTTCTTGCATTCTT-CGCAGCATCCGACGGAAT 72978 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 || ||||||| ||| | | || | || || ||| | ||||||||||| | Sbjct 72979 TGTCAACGAGAACTTGGTTGAAAGATTCAGCGGCGAAGTTCAAATCCCAGAGGCACGATG 73038 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 |||||||| ||||| ||| || || ||||||||||| ||||| ||||| || || || Sbjct 73039 CTTTTACGGTTTCCAAATCATGATGGAGAACATCCACTCCGAAACATACTCTCTTCTCAT 73098 Query 1456050 CGACACCTACGTCAAGGA 1456067 |||||| || ||||||| Sbjct 73099 CGACACATATATCAAGGA 73116 Score = 95.1 bits (104), Expect = 2e-13 Identities = 118/157 (75%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGG-AGGGCCTCGACACTTTGCCGA 1456180 ||| |||||||||||||| | || |||||| |||| | | ||| || |||||| | Sbjct 73224 GAAGAAGGCCGACTGGGCTGTCAAATGGATC--CAAGACAAGAACTCCAC-CTTTGCTCA 73280 Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 || ||||||| || || || || || || ||||| ||||| ||| ||| | |||| Sbjct 73281 ACGTCTCGTCGCTTTCGCTGCTGTTGAAGGTATCTTCTTCTCCGGCTCCTTCGCCTCCAT 73340 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTT 1456276 ||| |||||||||||||| || |||||| |||| ||| Sbjct 73341 CTTCTGGCTCAAGAAGCGTGGTCTCATGGCCGGACTT 73377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177560039413848