Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2210 114 1e-20 >seq2210 Length=20483 Score = 114 bits (126), Expect = 1e-20 Identities = 167/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 35503 TTTATTT-CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGT 35561 |||||| |||||||| | | | |||||| || || || || ||||||||||| |||| Sbjct 18244 TTTATTGACCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGT 18185 Query 35562 AATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 |||| | | ||||| | || |||| |||||| || ||||| ||||| || || || | Sbjct 18184 AATCCGAAAGGGTTCTGCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGAT 18125 Query 35622 CCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCG 35681 | | |||| || |||||| ||| |||||| ||| | | | | | || || || Sbjct 18124 CAGGTGGAATGCCCTCCTTATCCTGGATCTTCGACTTAACATTATCAATAGTATCTGACG 18065 Query 35682 ATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || |||| || || || || || ||||| || || ||||| || ||||| Sbjct 18064 ATTCTACTTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 18010 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | || | ||||| || | ||| |||||| || |||||||||||| | Sbjct 17497 CCACCACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 17438 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || || || || || || || || ||||| ||||| ||||| | |||| Sbjct 17437 AAGGTGCGACCATCTTCGAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGGTCAGGAGGA 17378 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| || | | | | | || ||||| ||||| ||| Sbjct 17377 ATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCAATGGTATCGCTGGATTCGACC 17318 Query 35690 TCCACCGTGATCGTTTTACCCGT 35712 || | ||||| || || || || Sbjct 17317 TCAAGAGTGATGGTCTTTCCGGT 17295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450778926668320