Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1009 291 1e-73 seq2055 104 3e-17 >seq1009 Length=94825 Score = 291 bits (322), Expect = 1e-73 Identities = 1325/2071 (64%), Gaps = 61/2071 (3%) Strand=Plus/Minus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || || ||||| |||| || || | | ||||||||||||||||| ||||| |||| | Sbjct 24293 GTGAATTGAATAGGTGCCGAGGCAGCCATGGTACGTAGATAGTACATTCCGGTCTTCAAA 24234 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | |||| || ||||||||| ||| | || | ||||| || Sbjct 24233 CCCAATTTCCAACCAGCAAAATGCATAGATGTAATCTTACCCATTGTAGGATCCTTCATG 24174 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 ||||| ||||| |||||| ||||||||| || || || | ||| || ||||||| | | Sbjct 24173 TGAATGTTCATTGATTGAGATTGATCGATAAATGCACCACGATCAGCAGCCATTTGAACA 24114 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | ||||| |||||||||| ||||| | | ||||| ||| |||||| Sbjct 24113 ATTGTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATA 24054 Query 68614 CTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | | ||||| |||||||||||||| | || || ||||| || | ||| | Sbjct 24053 TTGGGGATGTTTTGGATGGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCAGAC 23994 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 || | | || | || | || || |||||||| | ||| ||||| || Sbjct 23993 CAGAGACCCATATCGACAAGGTCTTTGAGAAGCCATGGATTAACGACTTGGAATTCTCCG 23934 Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790 | | || | ||| | ||| || || ||| || ||||| | | ||||||| || Sbjct 23933 GCAAGAACACGACGGGAGTAGATGTTTGAGGTGTAAGGTTCGAAACATTCATTGAAGCCA 23874 Query 68791 AGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850 |||||||| | || ||||| ||||| ||||| || | | || | | || Sbjct 23873 AGAATTTGGGATGTGCTAGCAGTAGGCATGGGTGCAACGAGGAGGGAGTTACGGATTCCG 23814 Query 68851 TGTGTTATGATTTTAT-CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATT 68909 ||| |||| | ||| || || ||||||||| | ||||| ||| |||| Sbjct 23813 TGTTGCTTGATGGATTGCTTCAAGGAGTC-CCAATCCCACAAATCAGTAGGTGTAACACC 23755 Query 68910 CCAAAGATCGTATTGTAGAATTCCGTT----ACTTGCATATGATCCATTATATGTTTCAT 68965 ||| | ||| ||||| || ||| || ||| | || || | ||| || || | Sbjct 23754 CCACATATCATATTGGAGTTCTCCCTTCGAGACTGGA----GAGCCTTGATAAGTGTCGT 23699 Query 68966 AAGGTCC---TTCCTGTTCAG-CTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATT 69021 | || || ||||| | || || | || | || || || ||| || || Sbjct 23698 ATGGGCCAAGTTCCTTTGCAATCTCG---ACGGATGAGGTC-AAGGCGGCGTGGTAGATA 23643 Query 69022 GTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGTAA 69080 || |||||||| | | ||||| | |||| |||||| | ||||||||| | | || Sbjct 23642 GTCTCGAAAATTTGGATGTTGAGGTGCTTG-GCTTCTGGGGAGTCGAATGGAAGACG-AA 23585 Query 69081 AAG--AATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTA 69138 || || ||| ||||| || | || ||||| || | | ||||||||||||||| | Sbjct 23584 GAGCCAAGAAA-GCATCAGCAAGACCTTGAACACCGACAGCGATAGGTCTATGTCGGAAA 23526 Query 69139 TTTGAACTTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 || | ||||| | |||||| | ||||| ||||| || || || || || || | || Sbjct 23525 TT-GCTCTTTCTGGCTTCTGCGACTGGATAGTAATTGATGTCAATGATCTTGTTCAAGTT 23467 Query 69198 TCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA-------TCGTCCAT 69250 || || || || | ||| || || | || || | || ||| | || | ||| Sbjct 23466 TCTAACAACAACCTGAACAACCTCGTGAAGCTTTTGGAAGTCATAAGTTCCCTCATTCAT 23407 Query 69251 CTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAAT 69310 | | || || | || || | ||| || | ||||| || ||||||| | Sbjct 23406 GT-TGACGAATGTTGGCAAAGCGATAGAAGCCAAGTTACAGCAAGCAACCTCATCTGG-- 23350 Query 69311 TTGCA---TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTT 69367 |||| || | | || ||||| || | || | | ||||| || || || | Sbjct 23349 -TGCAGAGTACTCCACGATTTCTGTGCACAAGTTGGAGCTTCGAATAGTACCGAGGTTCT 23291 Query 69368 GCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAA 69427 || || ||||| ||||| || || || |||||||| || || ||| | || || || Sbjct 23290 TTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGG 23231 Query 69428 TCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCT 69487 | |||| ||||| |||||| | ||||| ||| || || |||||| || || Sbjct 23230 TTTGAGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGATA---GTCTTGCGACCCT 23174 Query 69488 TCTCT---TTTTCATATTGT--GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATC 69542 | || || || || ||| | |||| ||||| || || || ||||||| | Sbjct 23173 TGCCTGCCTTCTCGTAACCCTCGTAGAGAGCC--TCGAACTCCTCACCATAAACATCTGC 23116 Query 69543 CAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTT 69602 ||| || |||||||| || || ||||| | | ||| | | | | | |||||| || Sbjct 23115 CAAGCCTGGACATTCGTTGGGGCACATGAGAGTCCATTCTCCGTTCTTTTCAACTCGCTT 23056 Query 69603 CATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATT 69662 ||| |||||||| |||||||| | || |||||||| | | | | |||||| || Sbjct 23055 CATGAATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCCTT 22996 Query 69663 TCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 69722 || ||| || ||||| || ||||| | || ||| | ||||||||| || || || Sbjct 22995 ACCATGATTCTTACGTAGATCAAGGAACTCGAAAACATCCGCATGCCATGGCTCAAGGTA 22936 Query 69723 TATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATT 69782 | || | | || || || || || || || || || | |||||||||||||| || Sbjct 22935 AACAGCAAAAGCACCAGGACGCTTGTTACCACCTTGGTCAACATATCTGGCAGTGTTGTT 22876 Query 69783 ATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACT 69842 | |||| ||||| |||| |||||| ||||| || ||||| || |||| || || Sbjct 22875 GAAAACTCGGAGCATAGGAACAATACCGTTAGAGTTTCCATTGGTACCAGCGATGTATGC 22816 Query 69843 TCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAG 69902 || | || || || | ||| ||||| || || || || | || ||||| | Sbjct 22815 ACCAGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCAGCATTCTTTGAGATCAT 22756 Query 69903 AGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAG 69962 ||||| ||||| ||||| || ||||| || || ||||| || |||||| | || Sbjct 22755 GGCACAGATCTTCAAAGTGTCGTAAATACCATCAATACTATCCTCCTTCATGTCGATGAG 22696 Query 69963 AAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTG 70022 || || || | ||| ||| ||| |||||| || | ||| || || || || Sbjct 22695 GAAGCACGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGGGAGGCATG 22636 Query 70023 AGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACT 70081 || || | || | || | || || |||||||| ||||| ||| ||||| ||| Sbjct 22635 TGTAAAGTACTTGTTCGACATCAAGTTATATGTTTCGATAGCACTTTCGATATCATCACC 22576 Query 70082 GATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTAT 70141 | ||||| || | || |||||||| | ||| || || || |||||| | || || Sbjct 22575 G-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTGCCAT 22517 Query 70142 TTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA--TGAAAA 70199 | | ||||||||| ||| || ||||| || || || || | ||| ||||| Sbjct 22516 CGAGACGTAGAAGGTATGATCGTTCAAGTGTTTTGAAGCCGAAGTATTGGTAGTTGAAA- 22458 Query 70200 GTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCAT 70259 |||| || || | |||| |||| || |||| |||| || | | | || || | Sbjct 22457 -TCTCGGTCATAGACAATAGCAGAGTTGAGTTCCTCCTCATGTCTCATGAC-GCATTCGA 22400 Query 70260 AACAGTAGGTG-AGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATA 70318 | | || || || |||||| | | |||||| | || || ||| | | ||| Sbjct 22399 ATGTTTCCTTGCTAATCATAGGAGATGGCGTGCCATTTCTTGGGTTTGTATATTGGTATA 22340 Query 70319 AATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTA 70378 |||| || |||| ||| |||| || |||| ||||| | ||| || | || | Sbjct 22339 AATCGCGGATAACATGCGAGAATTGTTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAA 22280 Query 70379 TTCTGGCTGCTAGAATAGCATAGTCAGGATG 70409 | | || |||||||| ||||| || ||||| Sbjct 22279 TACGAGCAGCTAGAATGGCATAATCGGGATG 22249 >seq2055 Length=75196 Score = 104 bits (114), Expect = 3e-17 Identities = 302/459 (66%), Gaps = 12/459 (3%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 |||||| || |||||||| |||||||| | |||||||| || || || || || | Sbjct 73737 CATAACACCGGCCTTTTGGTAATCACCAACTCTCTTCTCGAAGAAGTTGGTCTTACCAGC 73678 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATA---tttttttttAAA 39429 ||| || || || |||||||| || || || || || | || || ||| | ||| Sbjct 73677 CAAGGAGATGTTCTCCATGAAGTCGAATGGGTTGGTAGACTTGTAGAATTTGTCGTTA-- 73620 Query 39430 TCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACA 39489 || || | | | | ||| ||||| || || |||||| ||||| | | | Sbjct 73619 -CCCAAAGCCATGAGGAGACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGA 73561 Query 39490 ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTAC 39549 ||||| || | ||| | || |||||||| || | || |||| ||||| || || Sbjct 73560 GTTCATGCCCAAGAGAGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTTCAAC 73501 Query 39550 GGCCTCTGTTATTATCGATGTT--ACTACCT-CATCACTCGGTGGATGCAATAAATGTTT 39606 ||| || || || | || || || | | | | | || || ||| | ||| Sbjct 73500 GGCTTCGGTAATGAC--ATCTTGAACGGCTTGCTTGGATGGGCGG-TGCTTGAGATGAGA 73444 Query 39607 AAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGA 39666 || | | ||| ||||| || || || |||||||| | || | |||||| || Sbjct 73443 GAAGAGAAGGCATGCGAAATCGGTGTGGAGACCCTCATCACGGGAGATGAGTTCGTTGGA 73384 Query 39667 AAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC 39726 || || ||||| | ||| ||||||||||| |||||||| || |||| || || || || Sbjct 73383 GAAGGTAAGTCCGGCCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCC 73324 Query 39727 AGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 || |||||||| ||||| || || || || || || || Sbjct 73323 GGAGAAGAAGATACCTTCAACAGCAGCGAAAGCGACGAG 73285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686886441118560