Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1875 98.7 8e-16 >seq1875 Length=33692 Score = 98.7 bits (108), Expect = 8e-16 Identities = 223/334 (67%), Gaps = 11/334 (3%) Strand=Plus/Minus Query 19441 AATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTG 19500 || || || ||| | | || || || || |||||||| |||||||| | ||| | Sbjct 20203 AACGGCCCCGAAGTACTTAACAAGTACGTTGGTCAATCTGAAGAAAACATCCGAAAGCTC 20144 Query 19501 TTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTCTTTGCACATTAT 19559 ||||| || || ||| | ||| | || | |||| | | | ||| | || || || Sbjct 20143 TTTGCCGATGCCGAAAAGGAATACAAG-GAAAAGGGAGACGAGAGTGGCCTTCATATCAT 20085 Query 19560 AATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGG---------TGTAAA 19610 || | || |||||||| || | || || |||||||| ||| || || Sbjct 20084 CATTTTCGACGAATTGGATGCTGTGTGCAAACAAAGAGGAAGTGGAGCAGGTGGTGGAAC 20025 Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670 || || |||| ||||||||||||||| |||| ||| | |||||||| | || || Sbjct 20024 CGGTGTTGGAGACAGTGTTGTCAATCAACTGTTGTCTAAACTCGACGGTGTGGATCAGCT 19965 Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730 || |||||| | ||||||| ||||| ||| | |||| | || ||| ||| ||| | Sbjct 19964 CAACAATATTCTTCTTATTGGAATGACCAATCGTATGGATATGATCGACGACGCTTTACT 19905 Query 19731 ACGACCCGGTCGGTTGGAAATAAAGATCGAAATT 19764 ||||| || || |||||| | | || |||||| Sbjct 19904 TCGACCTGGGCGTTTGGAAGTTCACATGGAAATT 19871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397443386237020