Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1009 253 3e-62 seq2055 113 6e-20 >seq1009 Length=94825 Score = 253 bits (280), Expect = 3e-62 Identities = 742/1124 (66%), Gaps = 47/1124 (4%) Strand=Plus/Minus Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 |||| || |||||||||||||| | | | |||||||| ||||| | ||| ||||| | Sbjct 23572 CATCAGCAAGACCTTGAACACCGACAGCGATAGGTCTATGTCGGAAATTGCTCTTTCTGG 23513 Query 111111 CAGTCT-CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 111169 | ||| | || ||||| |||| ||||||||| ||| | ||| | ||||| | Sbjct 23512 CT-TCTGCGACTGGATAGTAATTGATGTCAATGATCTTGTTCAAGTTTCTAACAACAACC 23454 Query 111170 TTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTC-TTCAT--TGACATAC 111226 | | || ||||| |||| | ||| |||| | ||| ||||| |||| | Sbjct 23453 TGAACAACCTCGTGAAGCTTTTGGAAGTCATAAGTTCC---CTCATTCATGTTGACGAAT 23397 Query 111227 TTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCT 111286 |||| | ||||| || ||||| || || ||| |||||| | | |||||| Sbjct 23396 GTTGGCAAAGCGATAGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGCAGAGTACTCC 23337 Query 111287 AAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTC 111346 | |||||||| || |||||||| || ||| || || | ||||||||||| |||||| Sbjct 23336 ACGATTTCTGTGCACAAGTTGGAGCTTCGAATAGTACCGAGGTTCTTTTGGTTGCTCTTC 23277 Query 111347 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGA 111406 |||||||| ||||| ||||| |||||| | || | || ||||| || || | || |||| Sbjct 23276 TTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTTTGAGCTTCGAGA 23217 Query 111407 ATAGCCTTCCAAA-CATCGGCGGC-TGGTACAATGGCGTTGGCCCGTCCCT-CCGCCTCG 111463 |||| | ||||| | | | | | || || | || | ||| | ||| || |||| Sbjct 23216 ATAGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTGC---GACCCTTGCCTGCCTTCTCG 23160 Query 111464 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG 111523 || |||||| || || ||||||||||| | || | | ||||| | | Sbjct 23159 TAACCCTCGTAGAGAGCCTCGAACTCCTCACCATAAACATCTGCCAAGCCTGGACATTCG 23100 Query 111524 TCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 | || || | |||| ||||| || | ||||| ||||||||||| || || ||| Sbjct 23099 TTGGGGCACATGAGAGTCCATTCTCCGTTCTTTTCAACTCGCTTCATGAATAGATCAGGA 23040 Query 111584 ATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 111642 ||||||| || | |||||||| | | || ||| | ||||| | ||| || || || Sbjct 23039 ATCCACAAGGCGTAGAAGAGATCGCGTGCA-CGAACTTCTTCCTTACCATGATTCTTACG 22981 Query 111643 TAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC 111702 || ||||||||||| | | |||||| |||||||||||||| || || || | || || Sbjct 22980 TAGATCAAGGAACTCGAAAACATCCGCATGCCATGGCTCAAGGTAAACAGCAAAAGCACC 22921 Query 111703 CTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 111756 ||||| ||| |||| | ||||| | || ||| ||| || || || || Sbjct 22920 ---AGGACGCTTGTTACCACCTTGGTCAACATATCTGGCAGTGTTGTTGAAAACTCGGAG 22864 Query 111757 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 111816 ||| |||| |||||| | || | ||||| || || | ||| ||| || | Sbjct 22863 CATAGGAACAATACCGTTAGAGTTTCCATTGGTACC-------AGCGATGTAT--GCACC 22813 Query 111817 CACATCATGGA---TGTGCAT------CCCAATACCCCCAGCCCACTTTGAGATTTGCGC 111867 | || ||| |||| || |||||||| ||||| ||||||||| || Sbjct 22812 AGTAGCACGGATTCTGTGAATGTTGAGACCAATACCACCAGCATTCTTTGAGATCATGGC 22753 Query 111868 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 111927 ||| | | | ||| | || ||||| | || |||||||| || |||| ||||| Sbjct 22752 ACAGATCTTCAAAGTGTCGTAAATACCATCAATACTATCCTCCTTCATGTCGATGAGGAA 22693 Query 111928 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 111987 ||| || | || | | ||| ||||| ||| |||||| ||||| | || || | Sbjct 22692 GCACGATGAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGGGAGGCATGTGT 22633 Query 111988 GAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGT 112046 || ||| | | |||||| || ||||| || | || || || || || |||| Sbjct 22632 -AAAGTACTTGTTCGACATCAAGTTATATGTTTCGATAGCACTTTCGATATCATCACCGT 22574 Query 112047 GGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGA 112106 | || || | || || ||||||| ||| | ||||| ||| | ||||||||| Sbjct 22573 GAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTGCCATCGA 22514 Query 112107 GCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 | ||| |||| || | || | ||||| ||||||| || ||||| Sbjct 22513 GACGTAGAAGGTATGATCGT-TCAAGTGTTTTGAAGCCGAAGTA 22471 >seq2055 Length=75196 Score = 113 bits (124), Expect = 6e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||||||||||||||| ||||| || ||||| || |||||| || || | ||||||||| Sbjct 73419 GTGGAGACCCTCATCACGGGAGATGAGTTCGTTGGAGAAGGTAAGTCCGGCCATGAGACC 73360 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | | ||| || ||||||||||||||||| || ||| Sbjct 73359 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCTTCAACAGC 73300 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCATTTCATTG 122848 || || || | || |||| || |||| | ||| ||| | | | |||||| | | Sbjct 73299 AGCGAAAGCGACGAGACGTTGAGCAAAGGTG-GAGTTCTTGTCTTGGATCCATTTGACAG 73241 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTAC 122879 |||| | |||||||||| || || || || Sbjct 73240 CCCAGTCGGCCTTCTTCTTGATGCAAGGAAC 73210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628011557558400