Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1009 190 3e-43 seq2055 149 8e-31 >seq1009 Length=94825 Score = 190 bits (210), Expect = 3e-43 Identities = 1043/1636 (64%), Gaps = 43/1636 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || || |||||||| || ||||| | ||| ||||| || | |||||| || | Sbjct 24260 CGTAGATAGTACATTCCGGTCTTCAAACCCAATTTCCAACCAGCAAAATGCATAGATGTA 24201 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | ||| | || ||| | |||| | |||||| ||| ||||||||||| || Sbjct 24200 ATCTTACCCATTGTAGGATCCTTCATGTGAATGTTCATTGATTGAGATTGATCGATAAAT 24141 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTCC 118014 || ||||| || ||||| | || || || ||| | || ||||||| || ||| Sbjct 24140 GCACCACGATCAGCAGCCATTTGAA-CA-ATTGTTCGTTGAGAGATTTCCCAAACGGTCT 24083 Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCT 118074 ||||||| ||| || ||| |||| |||| ||| ||||||||||||||||| | Sbjct 24082 TGTAGAGAGCCTTGATGTCAGCTGGAATATTGGGGATGTTTTGGATGGATCCACCATCAG 24023 Query 118075 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 118134 | || | | |||||| | | ||||||||||| || | || || | | | Sbjct 24022 CAATGATACGGTTCTTCATGTTGTCAGACCAGAGACCCATATCGACAAGGTCTTTGAGAA 23963 Query 118135 G--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGT 118192 | ||| ||| || || || || || || || || | ||||| || | Sbjct 23962 GCCATGG--ATTAACGACTTGGAATTCTCCGGCAAGAACACGACGGGAGTAGATGTTTGA 23905 Query 118193 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGA-TTTGGGCTGTGGAGGCTGTGGGCA 118251 ||||| || || || || |||||| | |||||| |||||| |||| || || |||| Sbjct 23904 GGTGTAAGGTTCGAAACATTCATTGA-AGCCAAGAATTTGGGATGTGCTAGCAGTAGGCA 23846 Query 118252 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGT 118311 ||||||| | ||| ||| |||||||| || | || | | ||| || ||| | | || Sbjct 23845 TGGGTGCAACGAGGAGGGAGTTACGGATTCCGTGTTGCTTGATGGATTGCTTCAAGGAGT 23786 Query 118312 CCCAGTCGTAGT--TGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTG 118369 |||| || | | || | || | | | |||||||||| | ||||| || | Sbjct 23785 CCCAATCCCACAAATCAG-TAGGTGTAACACC-CCACATATCATATTGGAGTTCTCCCTT 23728 Query 118370 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCT 118429 || |||| || || | | | || || |||||||| ||| || | ||| | Sbjct 23727 CGAGACTGGAGAGCCTTGATAAGTGTCGTATGGGCCAAGTTCCTTTGCAATCTCGACGGA 23668 Query 118430 CGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 118489 | | ||| ||||| || || || || ||||| | || | |||||| || Sbjct 23667 TGAGGTCAAGGCGGCGTGGTAGATAGTCTCGAAAATTTGGATGTTGAGGTGCTTGGCTTC 23608 Query 118490 GTCGGAATCAAACGCGAGTCGGC-ACAAAATAAATACATCCGCGAGACCTTGGACACCGA 118548 ||| || || | || || | || ||| |||| || |||||||| ||||||| Sbjct 23607 TGGGGAGTCGAATGGAAGACGAAGAGCCAAGAAAG-CATCAGCAAGACCTTGAACACCGA 23549 Query 118549 GGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC-ACGGGATAAAAATTC 118607 | || || | ||||| | ||| ||| | || ||| | || ||||| |||| Sbjct 23548 CAGCGATAGGTCTATGTCGGAAATTGCTCTTTCTGGCT-TCTGCGACTGGATAGTAATTG 23490 Query 118608 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 118667 | || || | | | || | ||| | ||||||| | || |||||||||| | Sbjct 23489 ATGTCAATGATCTTGTTCAAGTTTCTAACAACAACCTGAACAACCTCGTGAAGCTTTTGG 23430 Query 118668 TAATCAAAACTGCGAGTCTC-TTCAT--TGACATACTTAGGAAGGGCGATTGACGCCAGA 118724 | ||| || | | ||| ||||| |||| | | || | ||||| || |||| Sbjct 23429 AAGTCATAAGTTCC---CTCATTCATGTTGACGAATGTTGGCAAAGCGATAGAAGCCAAG 23373 Query 118725 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAA 118784 ||||| || |||||| ||| |||||| | ||||| ||||||||||| || Sbjct 23372 TTACAGCAAGCAACCTCATCTGGTGCAGAGTACTCCACGATTTCTGTGCACAAGTTGGAG 23313 Query 118785 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 118844 || ||| || || | ||||||||| || ||| |||| || ||||| ||||||||| Sbjct 23312 CTTCGAATAGTACCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGC 23253 Query 118845 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGC- 118903 ||| | || | || ||||| ||||| | | |||||||| | ||| | | ||| Sbjct 23252 ATGAAAGGATTTCCGGTCTCGGTTTGAGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCC 23193 Query 118904 -TGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACT 118962 || | | ||| || ||| ||| |||||| |||||| || || |||| Sbjct 23192 TTGATAGTCTTGCG-ACCCTTGCCTGCCTT-CTCGTAACCCTCGTAGAGAGCCTCGAACT 23135 Query 118963 CTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGAC 119022 | ||||| | |||| | ||||| | | ||||| | ||||| ||||| | Sbjct 23134 CCTCACCATAAACATCTGCCAAGCCTGGACATTCGTTGGGGCACATGAGAGTCCATTCTC 23075 Query 119023 CACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCC 119082 | || ||||| ||||||||||| || || || ||||| | || |||||||||| | Sbjct 23074 CGTTCTTTTCAACTCGCTTCATGAATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGC 23015 Query 119083 GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCG 119142 | ||| ||||||| | || ||||| ||| | || | || || | | ||||| Sbjct 23014 GTGCACGAACTTCTTCCTTACCATGATTCTTACGTAGATCAAGGAACTCGAAAACATCCG 22955 Query 119143 CGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGT 119196 | ||||| || || ||||| || || | | || | |||| |||| | |||| Sbjct 22954 CATGCCATGGCTCAAGGTAAACAGCAAAAGCACC---AGGACGCTTGTTACCACCTTGGT 22898 Query 119197 TTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGC 119256 ||||| || |||||| ||| || || || ||||| |||| ||||| | || | | Sbjct 22897 CAACATATCTGGCAGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTAGAGTTTC 22838 Query 119257 CATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAAT 119314 |||| || || ||| || | || | | || | || ||| |||| | |||||| Sbjct 22837 CATTGGTACCAGCGATGTATG-CAC-CAGTAGCACGGATTCTGTGAATGTTGAGACCAAT 22780 Query 119315 ACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGAT 119374 ||| || || ||||||||| || || | | | | || |||| || ||||| || Sbjct 22779 ACCACCAGCATTCTTTGAGATCATGGCACAGATCTTCAAAGTGTCGTAAATACCATCAAT 22720 Query 119375 CGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAG 119433 || |||| | ||||||||||||| || | ||| || || || ||||| | Sbjct 22719 ACTATCCTCCTTCATGTCGATGAGGAAGCACGATGAAAGTTG-TGCTTGTGGAGTACCCG 22661 Query 119434 CGTTGAAGAGAGTTGG 119449 | |||||| ||||| Sbjct 22660 CAGAGAAGAGTGTTGG 22645 >seq2055 Length=75196 Score = 149 bits (164), Expect = 8e-31 Identities = 346/518 (67%), Gaps = 18/518 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || ||||| | ||||||||||||||| ||||| || ||||| ||| |||||||| Sbjct 73718 TAATCACCAACTCTCTTCTCGAAGAAGTTGGTCTTACCAGCCAAGGAGATGTTCTCCATG 73659 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA--TTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || || |||||||| | || || | | ||| | || | || | | |||||||| Sbjct 73658 AAGTCGAATGGGTTGGTAGACTTGTAGAATTTGTCGTTACCCAAAGCCAT--GAGGAGAC 73601 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 |||| | ||| |||| ||||| | ||| | ||||||||| || | ||| || Sbjct 73600 GATCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGAGTTCATGCCCAAGAGAGCAC 73541 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | || || || || | ||| | | ||| || || || ||||| | || | | Sbjct 73540 AAGGAAGAGCCTCGGTCAAGAATTCTTGCTCGATTTCAACGGCTTCGGTAATGACATCTT 73481 Query 129966 GAATGGTCTCCGTGCCAGGTCTAT---TGCGCAAAGTCTTGAAGAGTTCCACGGCA---- 130018 ||| || | | || || | | || | || |||||| | |||| Sbjct 73480 GAACGGCTTGCTTGGATGGGCGGTGCTTGAGATGAGA---GAAGAG----AAGGCATGCG 73428 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || || |||||||||||| ||||||||||||||||| || |||||| || || | | Sbjct 73427 AAATCGGTGTGGAGACCCTCATCACGGGAGATGAGTTCGTTGGAGAAGGTAAGTCCGGCC 73368 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 |||||||| |||||||| | |||||| || | || ||||| ||||||||||| || Sbjct 73367 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCT 73308 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCAC 130198 || ||| ||||| || | |||||| | |||||||| | | ||| | | ||| Sbjct 73307 TCAACAGCAGCGAAAGCGACGAGACGTTGAGCAAAGGTGGAGTTCTTGTCTTGGATCCAT 73248 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 130236 || | ||||| | ||||| |||| ||| || || || Sbjct 73247 TTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAAC 73210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618415069934240