Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1009 223 4e-53 seq2055 145 9e-30 >seq1009 Length=94825 Score = 223 bits (246), Expect = 4e-53 Identities = 1161/1816 (64%), Gaps = 75/1816 (4%) Strand=Plus/Plus Query 104166 TCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTCTTGATGGAAACCCCA 104224 ||||||| ||||| | || | || |||| ||| |||||||| | ||| ||| Sbjct 22481 TCAAAACACTTGA-ACGATCATACCTTCTACGTCTCGATGGCAAGGTTGCAGAACGTCCA 22539 Query 104225 CAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTG 104284 || | ||| ||||||| || ||| | |||||||| || || || || || || | Sbjct 22540 CAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATCGAAAGTGCTATC 22599 Query 104285 GAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTCAA 104343 || ||||| || |||||| | | ||| || | || || | ||||| |||||| Sbjct 22600 GAAACATATAACTTGATGTCGAACAAGTACTTT-ACACATGCCTCCCCAACACTCTTCTC 22658 Query 104344 TGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTC 104403 ||| ||||| ||| | | ||| | || |||||||| |||| || |||||||| Sbjct 22659 TGCGGGTACTCCACAAGCACAACTTTCATCGTGCTTCCTCATCGACATGAAGGAGGATAG 22718 Query 104404 AATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGG 104463 || | ||||| || | ||| | | | ||||| ||||||||| ||||| || Sbjct 22719 TATTGATGGTATTTACGACACTTTGAAGATCTGTGCCATGATCTCAAAGAATGCTGGTGG 22778 Query 104464 TATTGGG------ATGCACA---TCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGG 104514 |||||| || |||| ||| || | | || ||| ||| | || Sbjct 22779 TATTGGTCTCAACATTCACAGAATCCGTGCTACTGGTGC--ATACATCGCT-------GG 22829 Query 104515 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 104574 || ||||| | || | |||||| |||| ||||| || || || ||| ||| || | Sbjct 22830 TACCAATGGAAACTCTAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACTGCCAG 22889 Query 104575 CTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCC 104628 ||||| | |||| ||| ||||| || || | || || || |||||||| Sbjct 22890 ATATGTTGACCAAGGTGGTAACAAGCGTCCT---GGTGCTTTTGCTGTTTACCTTGAGCC 22946 Query 104629 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGC 104688 |||||| |||||| | | ||||||||||| | ||| || || ||| | || || | Sbjct 22947 ATGGCATGCGGATGTTTTCGAGTTCCTTGATCTACGTAAGAATCATGGTAAGGAAGAAGT 23006 Query 104689 GCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 104747 || ||| ||||||||||||| ||| | |||||||| ||||| ||||||||| |||||| Sbjct 23007 TCG-TGCACGCGATCTCTTCTACGCCTTGTGGATTCCTGATCTATTCATGAAGCGAGTTG 23065 Query 104748 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCG 104807 | ||| || | ||| ||||| | || || || | || || | | |||| Sbjct 23066 AAAAGAACGGAGAATGGACTCTCATGTGCCCCAACGAATGTCCAGGCTTGGCAGATGTTT 23125 Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC-- 104865 ||||||||||| || || || ||| |||||| | | ||| | | | | || Sbjct 23126 ATGGTGAGGAGTTCGAGGCTCTCTACGAGGGTTACGAGAAGGCAGG-CAAGGGTC-GCAA 23183 Query 104866 GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925 ||| | ||| | | ||| | |||||||| | ||||||||||||| || | Sbjct 23184 GACTATCAAGGCTCAAAAGCTTTGGTACTCTATTCTCGAAGCTCAAACCGAGACCGGAAA 23243 Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985 || | ||||||||||||||| || || ||| | ||||| || |||||||| | ||| Sbjct 23244 TCCTTTCATGCTTTACAAAGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGGTAC 23303 Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 || || ||||| | || ||||||||| |||| | | | ||||||| || Sbjct 23304 TATTCGAAGCTCCAACTTGTGCACAGAAATCGTGGAGTACTCTGCACCAGATGAGGTTGC 23363 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-ACAT 105104 | |||||| | || || |||||| | || | | || | | || | | || | Sbjct 23364 TTGCTGTAACTTGGCTTCTATCGCTTTGCCAACATTCGT-CAACATGAATGAGGGAACTT 23422 Query 105105 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTA 105164 ||| | |||| || ||||| ||| | ||| | |||| | |||| | | Sbjct 23423 ATGACTTCCAAAAGCTTCACGAGGTTGTTCAGGTTGTTGTTAGAAACTTGAACAAGATCA 23482 Query 105165 TTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 |||| | |||| || || || | ||| || | || ||| | |||| | || Sbjct 23483 TTGACATCAATTACTATCCAGTCGCAGA-AGCCAGAAAGAGCAATTTCCGACATAGACCT 23541 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTT 105280 || | | |||||||||| ||||| || |||| ||| | |||| ||| | |||| Sbjct 23542 ATCGCTGTCGGTGTTCAAGGTCTTGCTGATGCTTTCTTGGCTCTTCGTCTTC---CATTC 23598 Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 || ||| ||||| ||| | |||| | || || ||||| || || |||||||| Sbjct 23599 GACTCCCCAGAAGCCAAGCACCTCAACATCCAAATTTTCGAGACTATCTACCACGCCGC- 23657 Query 105341 CTTGAGGCGAGTTC--AGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 105398 ||||| | | | ||| | ||| ||| ||| ||||| || || | | | || | Sbjct 23658 CTTGA-CCTCATCCGTCGAGATTGCAAAGGAACTTGGCCCATACGACACTTATCAAGGCT 23716 Query 105399 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCA 105456 |||||| || | || | || |||| ||||||||||| || | ||| | || | Sbjct 23717 CTCCAGTCTCGAAGGGAGAACTCCAATATGATATGTGGG-GTGTTACACCTA-CTGATTT 23774 Query 105457 CTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516 | || ||||| | | ||| || ||||||| | | || | |||||| ||||| Sbjct 23775 GTGGGATTGGGACTCCTTGAAGCAATCCATCAAGCAACACGGAATCCGTAACTCCCTCCT 23834 Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGCTTTG 105575 | | || || ||||| || || ||| | |||| |||||| | |||||||| || | Sbjct 23835 CGTTGCACCCATGCCTACTGCTAGCACATCCCAAATTCTTGGCT-TCAATGAATGTTTCG 23893 Query 105576 AACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCA 105635 |||| ||||| | |||||||| | | || || ||||| || | || | Sbjct 23894 AACCTTACACCTCAAACATCTACTCCCGTCGTGTTCTTGCCGGAGAATTCCAAGTCGTTA 23953 Query 105636 A--CA-AGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGG 105692 | || || |||| | ||||| || || ||||||||||| | | |||||| Sbjct 23954 ATCCATGGCTTCTC---AAAGACCTTGTCGATATGGGTCTCTGGTCTGACAACATGAAGA 24010 Query 105693 A---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAA 105748 | | ||| || ||| ||||| ||||| ||||| || |||||||| ||| Sbjct 24011 ACCGTATCATTGCTGA----TGGTGGATCCATCCAAAACATCCCCAATATTCCAGCTGAC 24066 Query 105749 ATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGA--TGTCATTGACATGG 105806 || ||| | ||| || |||||||||||| | || || | || | |||| Sbjct 24067 ATCAAGGCTCTCTACAAGACCGTTTGGGAAATC--TCTCAACGAACAATTGTTCAAATGG 24124 Query 105807 CCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTC 105866 | || ||||||||| || || |||||| |||| ||||| | |||| | || Sbjct 24125 CTGCTGATCGTGGTGCATTTATCGATCAATCTCAATCAATGAACATTCACATGAAGGATC 24184 Query 105867 CAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGG 105926 | || ||| ||| | | |||||||| | ||||||| |||| | || || | Sbjct 24185 CTACAATGGGTAAGATTACATCTATGCATTTTGCTGGTTGGAAATTGGGTTTGAAGACCG 24244 Query 105927 GGATGTATTACCTCCG 105942 | ||||| || || || Sbjct 24245 GAATGTACTATCTACG 24260 >seq2055 Length=75196 Score = 145 bits (160), Expect = 9e-30 Identities = 348/519 (67%), Gaps = 18/519 (3%) Strand=Plus/Plus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 |||||| || || | ||||| || || |||||| | || ||| | | |||| | | Sbjct 73209 AGTTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAAATGGATCCAAGACAAGAACTC 73268 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 |||||||| | || ||| |||| || || |||||| |||||||||||||| || | Sbjct 73269 CA-CCTTTGCTCAACGTCTCGTCGCTTTCGCTGCTGTTGAAGGTATCTTCTTCTCCGGCT 73327 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 ||||| | | || | |||||||||||||| ||||||||| | || || |||||||| Sbjct 73328 CCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGGCCGGACTTACCTTCTCCA 73387 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAAT 94972 |||| || ||||| ||||| ||||| |||||| || || || || ||| || | Sbjct 73388 ACGAACTCATCTCCCGTGATGAGGGTCTCCACACCGATTTCGC-ATG--CCTTCTC---T 73441 Query 94973 TATTGCGTATTAA------ACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCG 95026 | | | | | || ||| | | | | |||| | | ||| ||||||| Sbjct 73442 TCTCTCATCTCAAGCACCGCCCATCCAAGCAAGCCGTTCAAGATGTCATTACCGAAGCCG 73501 Query 95027 TTGAGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATT 95086 |||| || ||| ||| |||| | || || ||||| || |||||| | || ||||| | Sbjct 73502 TTGAAATCGAGCAAGAATTCTTGACCGAGGCTCTTCCTTGTGCTCTCTTGGGCATGAACT 73561 Query 95087 CTGAAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGG 95146 | | ||| |||| || |||| || ||||| | | | | | | | ||| Sbjct 73562 CCAACCTCATGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTCATG--GCTTTGGG 73619 Query 95147 TGCCTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGA 95204 | | ||| | | || || | || ||||| ||||||||||||||||| | | | Sbjct 73620 TAACGACAAATTCTACAAGTCTACCAACCCATTCGACTTCATGGAGAACATCTCCTTGGC 73679 Query 95205 CGGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 95243 || ||||| ||||||||||| ||||| ||||| || || Sbjct 73680 TGGTAAGACCAACTTCTTCGAGAAGAGAGTTGGTGATTA 73718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583241814860960