Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1456 201 3e-46 seq2210 154 4e-32 seq1994 98.7 3e-15 seq2170 93.3 1e-13 seq475 87.8 5e-12 seq2306 84.2 7e-11 >seq1456 Length=91500 Score = 201 bits (222), Expect = 3e-46 Identities = 489/737 (66%), Gaps = 14/737 (2%) Strand=Plus/Minus Query 349201 TATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGT 349260 ||| || |||||||| ||||| || || |||||||| | | | | | ||||| | | Sbjct 55687 TATTGGTATCGATTTGGGTACCACCTACTCTTGTGTGGGTATCTTCCGTGATGATAGAAT 55628 Query 349261 AGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGA 349320 ||||| || || || || ||||| ||| | || || ||||| | |||||| || || || Sbjct 55627 CGAAATTATCGCCAACGACCAAGGAAACCGTACCACACCATCCTTCGTTGCCTTCACAGA 55568 Query 349321 AACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATAC 349380 ||||||||| |||| || ||| | || || || |||| || || |||| || || Sbjct 55567 TACTGAGCGTTTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCAATCAACAC 55508 Query 349381 GGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCT 349438 || || ||||||||||| | || || | | || | || | | | ||| || Sbjct 55507 CGTCTTCGATGCTAAGCGTTTGATCGGACGCAAGTTCGCAGATGCTGAGGT--TCAAGCT 55450 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGT---GATAAACCAATTATT 349495 ||| | || ||||| || || | || ||| ||| || | || ||| | || Sbjct 55449 GATATGAAGCATTTCCCATTCAAGGTCGTT------GACCGTGCCGGAAAGCCAGTCATC 55396 Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 ||||| || | || || || | || ||||| ||| |||||||| || || ||| | Sbjct 55395 GAGGTCGAGTTCAAGGGCGAGAACAAGCAATTCACACCAGAAGAAATCTCTTCCATGATC 55336 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 || || || |||| || | |||||| || || | |||| ||| || | | || || Sbjct 55335 TTGGTCAAGATGAGAGAGACTGCTGAGGCTTACCTCGGTGGAACCGTCAACAACGCCGTC 55276 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 | || || ||||| || || | ||| |||| ||| || || || || ||||| | Sbjct 55275 GTCACAGTTCCAGCTTACTTCACCGATTCCCAACGTCAAGCTACTAAGGACGCTGGTCTC 55216 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 || || || | || ||||| | || || || ||||| || || || || ||||| || Sbjct 55215 ATCGCTGGTCTCAACGTTCTCCGTATCATCAACGAACCTACCGCAGCTGCCATTGCTTAC 55156 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || | || || | || || || || |||| || || ||| | ||||| || Sbjct 55155 GGTTTGGACAAGAAGATCGAGGGTGAGCGTAACGTTCTCATCTTCGATCTTGGTGGAGGA 55096 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || || ||||| || || | || | || ||||| || || || ||||| | || ||| Sbjct 55095 ACCTTCGATGTTTCCCTCTTGACTATCGAGGAGGGTATCTTCGAGGTTAAGTCCACCGCT 55036 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || || | ||||| || || || || || ||||| ||| ||||| || || Sbjct 55035 GGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTTGTTAACCATTTCGTAAAT 54976 Query 349916 GAATTTAAGCGTCAAGC 349932 ||||| || || ||||| Sbjct 54975 GAATTCAAACG-CAAGC 54960 >seq2210 Length=20483 Score = 154 bits (170), Expect = 4e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | ||| || || | ||||| |||||||| || || || || | Sbjct 17788 TTTGCATACCACCACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGT 17729 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | ||| || ||||| || |||||||| || || ||||| | |||||| |||| Sbjct 17728 AATCGGAGAGTGTACGGCCATCCTCGAGTTGTTTGCCGGCGAAGATCAAACGTTGTTGAT 17669 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || ||||| || || ||||| || | ||| || || || || | || || | Sbjct 17668 CGGGAGGGATGCCTTCCTTGTCTTGAATCTTCGATTTGACGTTGTCGATGGTGTCGGAAG 17609 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727 |||||| || || |||| |||||||| || || || || |||| Sbjct 17608 ATTCAACCTCGAGGGTAATGGTCTTTCCCGTGAGAGTCTTAACAA 17564 Score = 145 bits (160), Expect = 2e-29 Identities = 161/212 (76%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | ||| || || | || ||||||||||| || || || || | Sbjct 17505 TTTGCATACCACCACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGT 17446 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || || || |||||||| |||||||| || || || || | ||| || || | Sbjct 17445 AATCGCTCAAGGTGCGACCATCTTCGAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGGT 17386 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||||||||| || || ||||| || || | ||| ||||| ||||| | ||| | || Sbjct 17385 CAGGAGGAATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCAATGGTATC-GCTG 17327 Query 140683 G-TTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | ||| || ||||| || | ||||||||||| Sbjct 17326 GATTCGACCTCAAGAGTGATGGTCTTTCCGGT 17295 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 140547 TCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAG 140606 || ||||||||||| ||||| || | |||| ||||| || | || ||||| |||||| Sbjct 18200 TCCTTTTGAATATTGTAATCCGAAAGGGTTCTGCCATCCTCCAACTGCTTTCCTGCAAAG 18141 Query 140607 ATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTA 140666 || | ||||| |||||||| ||||| || || |||||||| || || | || |||||| Sbjct 18140 ATCAATCGTTGTTGATCAGGTGGAATGCCCTCCTTATCCTGGATCTTCGACTTAACATTA 18081 Query 140667 TCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACA 140726 ||||| | ||| || | ||| ||||| | ||||| |||||||| || | || || ||| Sbjct 18080 TCAATAGTATCTGACGATTCTACTTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTGACA 18021 Query 140727 AAAATCTGCAT 140737 || || ||||| Sbjct 18020 AAGATTTGCAT 18010 Score = 122 bits (134), Expect = 3e-22 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | ||| | || || || ||||| || || | Sbjct 18016 TTTGCATACCACCACGGAGACGAAGGACCAAATGTAAGGTCGATTCCTTTTGGATGTTGT 17957 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | || || ||||| || | || || ||||||||||| |||||||| |||| Sbjct 17956 AATCCGAAAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGTTGAT 17897 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || || || ||||| || || || | || ||||| || || | || |||| Sbjct 17896 CAGGTGGGATACCCTCCTTATCTTGGATCTTGGACTTCACATTGTCGATGGTGTCCGATG 17837 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | || | |||||| || || || || || || || || ||||| Sbjct 17836 ACTCAACCTCCAAAGTGATTGTCTTCCCAGTGAGGGTCTTGACGAAGATTTGCAT 17782 >seq1994 Length=27662 Score = 98.7 bits (108), Expect = 3e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 ||||| || || ||||| || | || || || || || | ||| |||||||| ||||| Sbjct 3891 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCCTCCAATTGCTTTCCAGCGAAGATC 3950 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | |||||| ||||| ||||||||||| || || ||||| || || | || ||||| || Sbjct 3951 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4010 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 || | || || | || || ||||| || | ||||| || || || || || || || Sbjct 4011 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 4069 >seq2170 Length=21416 Score = 93.3 bits (102), Expect = 1e-13 Identities = 221/330 (67%), Gaps = 7/330 (2%) Strand=Plus/Plus Query 349565 ATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTA 349624 |||||||||||||| |||| | || || | || || | | || || || ||||| Sbjct 14605 ATGAAGGAAATTGCCGAAGTCAAGTTGGGCAAGACCGTCTCCAAGGCCGTCATCACTGTC 14664 Query 349625 CCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGG 349684 |||||||| || || || ||| ||| || || || |||||||| ||| || || Sbjct 14665 CCAGCCTACTTCAACGACAACCAACGTCAAGCTACCAAGGATGCTGGTGCCATCGCTGGT 14724 Query 349685 TTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGAT 349744 | || ||||| | || || || || || || ||||| || || || || || |||| | Sbjct 14725 CTTAACGTTCTCCGTATCATCAACGAGCCTACCGCTGCTGCCATCGCTTACGGTCTTGGT 14784 Query 349745 AAAATGAGTGACCAAGaaaaa----aaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800 || | |||| || | || |||| || | ||| | |||||||| ||||| Sbjct 14785 -GCCGGAAAGTCCAACAAGGAGCGCAACGTTCTCATCTACGATCTCGGTGGTGGAACTTT 14843 Query 349801 TGATGTATCACTAC-TAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859 ||||| || || | ||||| | ||| || | || ||||| || ||||| |||| Sbjct 14844 CGATGTTTCCCTCCTTAACA-TCCAAGGTGGTGTCTTCACCGTTAAGGCTACTGCCGGTG 14902 Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATA 349889 | || ||| | || || ||||||| |||| Sbjct 14903 ACACCCATTTGGGAGGTCAAGATTTCGATA 14932 >seq475 Length=52298 Score = 87.8 bits (96), Expect = 5e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 182913 GCGCTAACATTTAAAATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACA 182972 ||| |||| || || || || || | ||||| || || || || || || ||||||||| Sbjct 35768 GCGGTAACCTTCAAGATTCCGTTTGCGTCAAGCTCGAAAGAAACCTCGATTTGTGGAACA 35827 Query 182973 CCTCGTGGCATTGGTGGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTA 183032 || ||||| ||||||||| || || || |||| ||| | || || ||||| ||| Sbjct 35828 CCACGTGGTGCTGGTGGAATACCGGTCAACTCGAATTTACCAAGGTTGTTGTTATCCTTA 35887 Query 183033 GTTCTTGCTCTCTCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATTATC 183085 || | | ||| || || ||| | ||||| || |||| |||| || ||||| Sbjct 35888 GTCATAGTTCTTTCTCCCTCAAAGACTTGGATCAAAACTACTGGTTGGTTATC 35940 Score = 84.2 bits (92), Expect = 7e-11 Identities = 233/357 (65%), Gaps = 3/357 (1%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || || || ||||| | ||| || | | || |||||||| | || ||| |||| | Sbjct 36882 CCTGAGGAGATTTCCGCCATGATTCTTGGAAAGATGAAGGACGTCGCCGAATCATACCTT 36823 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | || || || | || ||| ||||||| |||||||| || || || ||| | Sbjct 36822 GGAAAGACTGTTACCCACGCAGTTGTTACTGTCCCAGCCTACTTCAACGACAACCAAAGA 36763 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || | ||||| || || | || || | || | |||||| Sbjct 36762 CAAGCCACCAAGGATGCCGGTATTATTGCCGGTTTGGAAGTCCTCCGTATTGTCAATGAA 36703 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || || || ||||| ||||| || || | || || || ||| ||| | | || Sbjct 36702 CCTACCGCCGCAGCTATTGCCTACGGTTTGGACAA---GACTGAGGGTGAACGACAAATC 36646 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || | | ||| | ||||| || || || ||||| || || || | |||| || Sbjct 36645 ATTGTCTACGATCTTGGTGGAGGAACCTTCGATGTTTCCCTTCTCTCCATTGACCGTGGT 36586 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 | ||||| ||| | ||||| ||||| || || | || ||||||||||| ||| Sbjct 36585 GTGTTTGAGGTTCTTTCTACTGCCGGTGACACTCACTTGGGAGGAGAAGATTTCGAT 36529 >seq2306 Length=17745 Score = 84.2 bits (92), Expect = 7e-11 Identities = 101/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 ||||| |||||| | ||||| ||| || |||| || ||||| || ||||| || || Sbjct 14105 CGTGGAACACCAAGGGTAACGTTC---TTGGATGAAATACCAGTGAAATGGAAGGTGTTC 14049 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 | || | ||| || | || || ||||| ||||| || |||| || |||||||| || Sbjct 14048 AAGGTCATTTGTGTGGCAGGTTCTCCAATAGACTGTGCAGCAAGCACACCAACCATCTCA 13989 Query 377578 CCAGGATTGACAATAGC 377594 ||||||||||| | ||| Sbjct 13988 CCAGGATTGACCAAAGC 13972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515203845431012