Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1009 167 3e-36 seq2055 152 6e-32 >seq1009 Length=94825 Score = 167 bits (184), Expect = 3e-36 Identities = 300/436 (69%), Gaps = 2/436 (0%) Strand=Plus/Plus Query 19271 ATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCC 19330 |||||||| || || ||||| || || ||||| || | ||| || || ||||| Sbjct 22705 ATGAAGGAGGATAGTATTGATGGTATTTACGACACTTTGAAGATCTGTGCCATGATCTCA 22764 Query 19331 AAGTGGTCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAAT 19389 ||| | || ||||| || || || | | | | ||||| | | |||| || || Sbjct 22765 AAGAATGCTGGTGGTATTGGTCTCAACATTCACAGA-ATCCGTGCTACTGGTGCATACAT 22823 Query 19390 CAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACAC 19449 | ||| || || ||| | ||||||| || || |||||||| || ||||||||||| Sbjct 22824 CGCTGGTACCAATGGAAACTCTAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACAC 22883 Query 19450 GGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGA 19509 ||||| || || |||| || || ||| || || | || || | ||||| || Sbjct 22884 TGCCAGATATGTTGACCAAGGTGGTAACAAGCGTCCTGGTGCTTTTGCTGTTTACCTTGA 22943 Query 19510 GCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGA 19569 ||||||||| ||||| || | || ||||| || || || ||| || ||| | || || Sbjct 22944 GCCATGGCATGCGGATGTTTTCGAGTTCCTTGATCTACGTAAGAATCATGGTAAGGAAGA 23003 Query 19570 GATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGT 19629 | || ||||| |||||| |||||||||||||| || ||||||||| || || Sbjct 23004 AGTTCGTGCACGCGATCTCTTCTACGCCTTGTGGATTCCTGATCTATTCATGAAGCGAGT 23063 Query 19630 TGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGT 19689 ||| ||| ||| ||||||| || |||||||| ||||||| || ||| | | || || Sbjct 23064 TGAAAAGAACGGAGAATGGACTCTCATGTGCCCCAACGAATGTCCAGGCTTGGCAGATGT 23123 Query 19690 CTACGGCGAGGCGTTC 19705 || || |||| |||| Sbjct 23124 TTATGGTGAGGAGTTC 23139 Score = 152 bits (168), Expect = 6e-32 Identities = 339/504 (67%), Gaps = 20/504 (4%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGA-TGGTGCCGATGTTCTTCTGGTTGC 79156 ||| | ||||||||||||||| || || | | || | || |||| |||||| ||||||| Sbjct 23340 CTCCACGATTTCTGTGCACAAGTTGGA-GCTTCGAATAGTACCGAGGTTCTTTTGGTTGC 23282 Query 79157 TCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCT 79216 |||||| ||| || || || ||||| |||| | || | |||||||| ||| | Sbjct 23281 TCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTTTGAGCTT 23222 Query 79217 TGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGA 79276 ||||| || ||| | | | ||| || | ||||| ||||||| ||| Sbjct 23221 CGAGAATAGAGTACCAAAGCTTTTGAGCCTTGATAG---TCTTG---CGACCCT-TGC-- 23171 Query 79277 CGTACGTCCGGTACAACTCGTTGAAAGCCTCC---------CCATAGACATCGGGCAGGC 79327 | | || ||| ||||| || |||||| ||||| ||||| | || || Sbjct 23170 CTGCCTTCTCGTAACCCTCGTAGAGAGCCTCGAACTCCTCACCATAAACATCTGCCAAGC 23111 Query 79328 CCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGA 79387 | || || |||| |||||||| || ||| || ||| ||| ||||| || ||||| Sbjct 23110 CTGGACATTCGTTGGGGCACATGAGAGTCCATTCTCCGTTCTTTTCAACTCGCTTCATGA 23051 Query 79388 AGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCT 79447 | || || || ||||||| ||| |||||| ||||| ||| | || || | || | Sbjct 23050 ATAGATCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCCTTACCAT 22991 Query 79448 GGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGG 79507 | ||| ||| || || || || || | | || || ||||| ||||| || || | | Sbjct 22990 GATTCTTACGTAGATCAAGGAACTCGAAAACATCCGCATGCCATGGCTCAAGGTAAACAG 22931 Query 79508 CGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAA 79567 | || | ||| |||||| || || |||| || || | ||| ||||||||||||| Sbjct 22930 CAAAAGCACCAGGACGCTTGTTACCACCTTGGTCAACATATCTGGCAGTGTTGTTGAAAA 22871 Query 79568 CTCGGAGCATGGGCACGATGCCGT 79591 |||||||||| || || || |||| Sbjct 22870 CTCGGAGCATAGGAACAATACCGT 22847 >seq2055 Length=75196 Score = 152 bits (168), Expect = 6e-32 Identities = 315/455 (69%), Gaps = 18/455 (4%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 ||||| ||||||||| | ||||| || ||| || ||||| ||||||||||| ||||| || Sbjct 73273 TTTGCTCAACGTCTCGTCGCTTTCGC-TGCTGTTGAAGGTATCTTCTTCTCCGGCTCCTT 73331 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 | | || ||||||||||| |||||||| |||||| | || || | ||||||||||| Sbjct 73332 CGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGGCCGGACTTACCTTCTCCAACGA 73391 Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCT 60151 || || ||||| || ||||| ||||| || || ||| || | ||| ||| | | | Sbjct 73392 ACTCATCTCCCGTGATGAGGGTCTCCACACCGATTTCGCA-TG-CCTTCTCTTCTCTCAT 73449 Query 60152 ATTGGAAAAATGCCCTTCCAAGGATATTC--ACAAGAT-TGTTCAGTG-GGCTTGTGAAG 60207 | | | |||| |||||| | | | |||||| | | | | || |||| Sbjct 73450 -CTCAAGCACCGCCCATCCAAGCA-AGCCGTTCAAGATGTCATTACCGAAGCCGTTGAAA 73507 Query 60208 TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAG 60267 | ||| || ||| | || || || ||||| || ||| | || ||| || | Sbjct 73508 TCGAGCAAGAATTCTTGACCGAGGCTCTTCCTTGTGCTCTCTTGGGCATGAACTCCAACC 73567 Query 60268 AAATGACGCAGTACATTCAGTTTGTCGCGGACCG---CCTCATGGCCCAGTTTGGAGAAG 60324 |||| ||| ||||| |||| || || || || ||||||||| ||||| || Sbjct 73568 TCATGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTCATGGC----TTTGGGTAAC 73623 Query 60325 GACCAATT-TACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383 ||| |||| ||| | ||||| ||||||| ||||||| |||||| |||| || Sbjct 73624 GACAAATTCTACAAGTCTACCAACCCATTCGACTTCATGGAGAACATCTCCTTGGCTGGT 73683 Query 60384 AAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||| |||||| | || || ||||| Sbjct 73684 AAGACCAACTTCTTCGAGAAGAGAGTTGGTGATTA 73718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548506945517760