Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1009 161 1e-34 >seq1009 Length=94825 Score = 161 bits (178), Expect = 1e-34 Identities = 503/765 (66%), Gaps = 28/765 (4%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || ||| | ||||| |||||||| || | ||| || || || Sbjct 22550 TCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATCGAAAGTGCTATCGAAACATATA 22609 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 |||| ||| | ||||||||||| || ||| | ||||| || ||| || ||||| Sbjct 22610 ACTTGATGTCGAACAAGTACTTTACACATGCCTCCCCAACACTCTTCTCTGCGGGTACTC 22669 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || | || | || |||||||| | | |||||||| || || || || | Sbjct 22670 CACAAGCACAACTTTCATCGTGCTTCCTCATCGACATGAAGGAGGATAGTATTGATGGTA 22729 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 | ||||| || | ||| |||||| ||||| ||| | |||||||| ||| || Sbjct 22730 TTTACGACACTTTGAAGATCTGTGCCATGATCTCAAAGAATGCTGGTGGTATTGGTCTCA 22789 Query 53433 AC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || | | | ||| ||||||| | || || ||| || || || || | | | Sbjct 22790 ACATTCACAGAA--TCCGTGCTACTGGTGCATACATCGCTGGTACCAATGGAAACTCTAA 22847 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || || || ||||||||||| || ||||||||||| ||| | || || |||| ||||| Sbjct 22848 CGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACTGCCAGATATGTTGACCAAGGTGG 22907 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 | ||||| || | || || | ||||| ||||| ||||| || || || | || Sbjct 22908 TAACAAGCGTCCTGGTGCTTTTGCTGTTTACCTTGAGCCATGGCATGCGGATGTTTTCGA 22967 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-T 53668 ||| || || || ||| |||||| ||| | ||||| | || ||| || || || || | Sbjct 22968 GTTCCTTGATCTACGTAAGAATCATGGTAAGGAAGAAGTTCG-TGCACGCGATCTCTTCT 23026 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTAC 53728 || || |||||||||| || || |||||| | || || ||| ||| || ||| Sbjct 23027 AC-GCCTTGTGGATTCCTGATCTATTCATGAAGCGAGTTGAAAAGAACGGAGAATGGACT 23085 Query 53729 CTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGA- 53787 || |||||||| ||||| || || ||| | | ||| || ||||||||||| ||| Sbjct 23086 CTCATGTGCCCCAACGAATGTCCAGGCTTGGCAGATGTTTATGGTGAGGAGTT---CGAG 23142 Query 53788 GATGTATCGGACG--TAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCG 53839 | | | | || | ||| |||| |||| ||| |||| ||||||| Sbjct 23143 GCTCTCTACGAGGGTTACGAGAAGGCAGGCAAGGGTCGC------AAGACTATCAAGGCT 23196 Query 53840 CGTGAGGTATGGGATGCAATCCTCAAGAGC-CAGGTGGAGACGGGAACGCCGTACATGTG 53898 | || | ||| | | || ||| | ||| || ||||| |||| || | |||| Sbjct 23197 CAAAAGCTTTGGTACTCTATTCTCGA-AGCTCAAACCGAGACCGGAAATCCTTTCATGCT 23255 Query 53899 CTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 ||||| ||| | |||| ||||||||||||| |||||| |||| Sbjct 23256 TTACAAAGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGG 23300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198188119200