Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2089 161 1e-34 seq1009 159 4e-34 seq2210 152 6e-32 seq1994 138 1e-27 >seq2089 Length=24093 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||| || || || || ||||||||||| Sbjct 11599 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 11658 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || ||||||||||||||||| || || ||||| Sbjct 11659 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACCAA 11718 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||||||||| |||| || ||||| | ||||| || Sbjct 11719 CAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGACTACAAC 11778 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| |||||||| || | || || ||||| || ||||| Sbjct 11779 ATCCAAAAGGAGTCCACTCTCCACTTGGTGTTACGTCTCCGTGGTGG 11825 >seq1009 Length=94825 Score = 159 bits (176), Expect = 4e-34 Identities = 524/805 (65%), Gaps = 21/805 (3%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTT--AATTGTACCCAGGTTTTTCTGGTT 81005 |||| |||||||| |||||||| || || ||| ||| ||||| ||||| || ||||| Sbjct 23341 ACTCCACGATTTCTGTGCACAAGTTGGAG--CTTCGAATAGTACCGAGGTTCTTTTGGTT 23284 Query 81006 TGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGA 81065 ||| |||||| || || ||||| |||| | || | ||||||||| || | Sbjct 23283 GCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTTTGAGC 23224 Query 81066 CTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGC 81125 | ||| || | || ||||| || | ||||||| |||||| |||||| | Sbjct 23223 TTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTGCGACCCTTGCCTGCCTT 23164 Query 81126 CACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCA 81185 | | || |||| | ||||||| |||| | || || | | | |||| || Sbjct 23163 CTCGTAACCCTCGTAGAGAGCCTCGAACTCCTCACCATAAACATCTGCCAAGCCTGGACA 23104 Query 81186 CTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTC 81245 ||||| |||||||| || ||| || || || || || ||||||||| || Sbjct 23103 TTCGTTGGGGCACATGAGAGTCCATTCTCCGTTCTTTTCAACTCGCTTCATGAATAGATC 23044 Query 81246 AGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGA 81304 ||| ||||| | |||| ||| || ||||| ||| || | || || | ||| || || Sbjct 23043 AGGAATCCACAAGGCGTAGAAGAGATCGCGTGCA-CGAACTTCTTCCTTACCATGATTCT 22985 Query 81305 GGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG 81364 || | || || || || | | ||||||||||||||||| || || || || | | Sbjct 22984 TACGTAGATCAAGGAACTCGAAAACATCCGCATGCCATGGCTCAAGGTAAACAGCAAAAG 22925 Query 81365 ACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACAC 81418 || |||| || |||| |||| || || | |||||| ||| || || | Sbjct 22924 CACCAGGACGCTTGTTAC---CACCTTGGTCAACATATCTGGCAGTGTTGTTGAAAACTC 22868 Query 81419 GCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGG 81478 | | |||||| | ||||| | || | || || ||||| |||| | || | | Sbjct 22867 GGAGCATAGGAACAATACCGTTAGAGTTTCCATTGGTACCAGCGATGTATGCACCAGTAG 22808 Query 81479 CGCGCACCTTGCTGATTGAA-AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACAC 81537 | || | || ||| || ||||| || ||||| | |||||| ||| ||||| Sbjct 22807 CACGGATTCTG-TGAATGTTGAGACCAATACCACCAGCATTCTTTGAGATCATGGCACAG 22749 Query 81538 CGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAG 81597 |||| || || ||||| || || || ||||| | |||||||| | | ||| || Sbjct 22748 ATCTTCAAAGTGTCGTAAATACCATCAATACTATCCTCCTTCATGTCGATGAGGAAGCAC 22689 Query 81598 CTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGA 81655 ||| | || | ||| | ||| || ||| ||| |||||||||| || || | | Sbjct 22688 GATGAAAGTTGTG--CTTGTGGAGTACCCGCAGAGAAGAGTGTTGGGGAGGCATGTGTAA 22631 Query 81656 AATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAA 81715 | || ||| ||||||| || ||| ||||| | | | | ||||| |||||||||| Sbjct 22630 AGTACTTGTTCGACATCAAGTTATATGTTTCGATAGCACTTTCGATATCATCACCGTGAA 22571 Query 81716 TACCGATAGCTACACGCATAAACAT 81740 |||| | || |||||||| | ||| Sbjct 22570 TACCAACGGCAACACGCATGATCAT 22546 >seq2210 Length=20483 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || ||||| || ||| | |||||||||||| Sbjct 17782 ATGCAAATCTTCGTCAAGACCCTCACTGGGAAGACAATCACTTTGGAGGTTGAGTCATCG 17841 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| | || || || || |||||||| || || || || || Sbjct 17842 GACACCATCGACAATGTGAAGTCCAAGATCCAAGATAAGGAGGGTATCCCACCTGATCAA 17901 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || |||||||||||||| | ||||||| || || || | || || || Sbjct 17902 CAACGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTTTCGGATTACAAC 17961 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| || | ||| | ||| | ||||| || ||||| Sbjct 17962 ATCCAAAAGGAATCGACCTTACATTTGGTCCTTCGTCTCCGTGGTGG 18008 Score = 145 bits (160), Expect = 9e-30 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || ||||||||||| || || | |||| ||||| ||| | || | Sbjct 17295 ACCGGAAAGACCATCACTCTTGAGGTCGAATCCAGCGATACCATTGACAATGTCAAATCC 17354 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||||||||||||||| ||||| |||||| | ||||| || || || Sbjct 17355 AAGATCCAGGACAAGGAGGGAATTCCTCCTGACCAACAGCGTTTGATTTTCGCCGGCAAA 17414 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 |||||||| |||| ||| ||| | ||| || || || |||| ||||| || ||||| || Sbjct 17415 CAACTCGAAGATGGTCGCACCTTGAGC-GATTACAACATCCAGAAGGAGTCTACTCTCCA 17473 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| | | ||||| ||||| Sbjct 17474 CTTGGTCCTCAGACTTCGTGGTGG 17497 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | || || ||||| ||||| | || || || || Sbjct 18010 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATTACATTGGAAGTAGAATCGTCA 18069 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||| | || || ||||| |||||||| ||||| || || || Sbjct 18070 GATACTATTGATAATGTTAAGTCGAAGATCCAGGATAAGGAGGGCATTCCACCTGATCAA 18129 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || ||||| || ||||| | ||||||| | ||||| | || || ||| Sbjct 18130 CAACGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGCAGAACCCTTTCGGATTACAAT 18189 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | ||||||||| ||| | || | || | |||||||| ||||| ||| Sbjct 18190 ATTCAAAAGGAAAGCACCTTGCACTTGGTGCTCCGTCTTCGTGGTGGTCAA 18240 Score = 113 bits (124), Expect = 5e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTG 27475 |||| ||||| || || || ||||| ||||| || |||||||| || || | ||| | Sbjct 17564 TTGTTAAGACTCTCACGGGAAAGACCATTACCCTCGAGGTTGAATCTTCCGACACCATCG 17623 Query 27476 CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535 || | || | || ||||| |||||||| || || ||||| || || || ||| | | Sbjct 17624 ACAACGTCAAATCGAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAACAACGTTTGA 17683 Query 27536 TTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 | || || || || ||||||||||||| ||||| || | || || || |||| |||| Sbjct 17684 TCTTCGCCGGCAAACAACTCGAGGATGGCCGTACACTCTCCGATTACAACATCCAGAAGG 17743 Query 27596 AATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||||| | ||| | | ||||| ||||| Sbjct 17744 AGTCTACCCTTCACTTGGTCCTCAGACTTCGTGGTGG 17780 >seq1994 Length=27662 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 27397 ATTACTATAATGCAA-ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGT 27455 |||| ||| || ||| | ||| |||||||| ||||| |||||||| || || |||||||| Sbjct 4087 ATTA-TATGATACAATAGCTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGT 4029 Query 27456 TGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC 27515 ||||| || | ||| | ||| | ||| | || || |||||||||||||||||||| Sbjct 4028 CGAGTCCTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCC 3969 Query 27516 TCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGC 27575 ||| || || || ||| | || || ||||| |||||| | ||||| | ||||| || | Sbjct 3968 TCCCGATCAACAACGTTTGATCTTCGCTGGAAAGCAATTGGAGGACGGACGTACTCTCTC 3909 Query 27576 AGACTATAATGTCCAAAAGG 27595 ||| || || ||||||||| Sbjct 3908 AGATTACAACATCCAAAAGG 3889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570291836396480