Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2089 120 2e-22 seq2210 98.7 6e-16 >seq2089 Length=24093 Score = 120 bits (132), Expect = 2e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| |||||||| ||||||||| ||||||||| ||||| || || ||||| || || Sbjct 11816 AGACGTAACACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGG 11757 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||| || ||||| || || || ||||||||||| || || | ||||||| Sbjct 11756 CCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATTCCCTCC 11697 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 11696 TTGTCCTGGATCTT 11683 >seq2210 Length=20483 Score = 98.7 bits (108), Expect = 6e-16 Identities = 99/127 (78%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTCGCTCGTCTT 34555 ||||| |||||||| |||||| || ||||| ||||| | || ||| || | |||| Sbjct 17479 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAAGGTG--CGACCATCTT 17422 Query 34556 CAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTG 34615 | |||||||| ||||| || || |||||||||||||| || || | |||||||||||| Sbjct 17421 CGAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCT 17362 Query 34616 TGATCTT 34622 |||||| Sbjct 17361 GGATCTT 17355 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||| || | ||||| ||||||||||| || ||||| ||| Sbjct 18236 CCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAA 18177 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || || | || || || ||||| || || || ||||| || || || Sbjct 18176 AGGGTTCTGCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGA 18117 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCT-TCGCTCTCCA 34657 | |||||||| || |||| || | ||||| || ||| || ||| || | || | Sbjct 18116 ATGCCCTCCTTATCCTGGATC-TTCGACTTAACATTATCAATAGTATCTGACGAT-TCTA 18059 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || || || || || || || ||||| || ||||| Sbjct 18058 CTTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 18010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314719611662732