Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2210 143 2e-29 seq2089 118 9e-22 seq1994 96.9 3e-15 >seq2210 Length=20483 Score = 143 bits (158), Expect = 2e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 26998 TTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTG 27057 |||| || ||||| || || ||| | ||||| || || || ||| | |||||| | || | Sbjct 17564 TTGTTAAGACTCTCACGGGAAAGACCATTACCCTCGAGGTTGAATCTTCCGACACCATCG 17623 Query 27058 AGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAA 27117 | | |||||| || ||||||||||| |||||||| || ||||||||||| ||||| | Sbjct 17624 ACAACGTCAAATCGAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAACAACGTTTGA 17683 Query 27118 TATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGG 27177 | | ||||||||||||| | || || | || | |||||||||||||| || |||| Sbjct 17684 TCTTCGCCGGCAAACAACTCGAGGATGGCCGTACACTCTCCGATTACAACATCCAGAAGG 17743 Query 27178 AGTCGACCTTACATTTGGT 27196 |||| ||| | || ||||| Sbjct 17744 AGTCTACCCTTCACTTGGT 17762 Score = 109 bits (120), Expect = 5e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 ||||| ||| | || |||||||| || ||| | ||| | ||||| | |||||| Sbjct 17295 ACCGGAAAGACCATCACTCTTGAGGTCGAATCCAGCGATACCATTGACAATGTCAAATCC 17354 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || ||||| || || || || || || ||||||||||| || | |||||||||| Sbjct 17355 AAGATCCAGGACAAGGAGGGAATTCCTCCTGACCAACAGCGTTTGATTTTCGCCGGCAAA 17414 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 ||| | ||||| || ||| | |||||||||||| || |||||||| || | || Sbjct 17415 CAACTCGAAGATGGTCGCACCTTGAGCGATTACAACATCCAGAAGGAGTCTACTCTCCAC 17474 Query 27192 TTGGT 27196 ||||| Sbjct 17475 TTGGT 17479 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || ||| | || ||| | || || || | || Sbjct 17782 ATGCAAATCTTCGTCAAGACCCTCACTGGGAAGACAATCACTTTGGAGGTTGAGTCATCG 17841 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || ||||| || || || || ||||| |||||| Sbjct 17842 GACACCATCGACAATGTGAAGTCCAAGATCCAAGATAAGGAGGGTATCCCACCTGATCAA 17901 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || || ||||| || | || |||| ||||||||| Sbjct 17902 CAACGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTTTCGGATTACAAC 17961 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| ||||||||||||||||| | ||| | || ||||| || Sbjct 17962 ATCCAAAAGGAATCGACCTTACATTTGGTCCTTCGTCTCCGTGGTGGTAT 18011 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| || ||| | ||||| | ||||| ||| |||| Sbjct 18010 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATTACATTGGAAGTAGAATCGTCA 18069 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || || || || || || ||||| ||||| |||||| Sbjct 18070 GATACTATTGATAATGTTAAGTCGAAGATCCAGGATAAGGAGGGCATTCCACCTGATCAA 18129 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | || || || || ||||| || | ||| |||| |||||||| Sbjct 18130 CAACGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGCAGAACCCTTTCGGATTACAAT 18189 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||||||| ||||| || ||||| | ||| | || ||||| Sbjct 18190 ATTCAAAAGGAAAGCACCTTGCACTTGGTGCTCCGTCTTCGTGGTGG 18236 >seq2089 Length=24093 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || ||||| | || || || || || || | || Sbjct 11598 CATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTC 11657 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || || ||||| || || || ||||| || || Sbjct 11658 GGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACCA 11717 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| || || | |||||| || ||| | ||||| | ||| ||||||| ||||| Sbjct 11718 ACAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGACTACAA 11777 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| ||||||||||| || | || ||||| || ||| | || ||||| Sbjct 11778 CATCCAAAAGGAGTCCACTCTCCACTTGGTGTTACGTCTCCGTGGTGG 11825 >seq1994 Length=27662 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || || || || |||||| | || || ||||| || || | |||||| | || Sbjct 4069 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATC 4010 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| || || || ||||| || || || || ||||||||||| ||||| Sbjct 4009 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCCGATCAACAACGTTTG 3950 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | ||| || || |||||||| ||| | || | || ||||||||||| |||||| Sbjct 3949 ATCTTCGCTGGAAAGCAATTGGAGGACGGACGTACTCTCTCAGATTACAACATCCAAAAG 3890 Query 27177 G 27177 | Sbjct 3889 G 3889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434904243406080