Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2210 188 2e-42 seq2089 179 9e-40 seq1994 143 6e-29 seq1009 107 4e-18 seq229 98.7 2e-15 >seq2210 Length=20483 Score = 188 bits (208), Expect = 2e-42 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| ||||| | |||||| || ||||| || |||||||| ||||| | || || Sbjct 17775 ACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGT 17716 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || || ||||| |||||||| | |||||||| || ||||| | || Sbjct 17715 ACGGCCATCCTCGAGTTGTTTGCCGGCGAAGATCAAACGTTGTTGATCGGGAGGGATGCC 17656 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || ||||| ||| ||||| ||||||||||| || |||||||||||| Sbjct 17655 TTCCTTGTCTTGAATCTTCGATTTGACGTTGTCGATGGTGTCGGAAGATTCAACCTCGAG 17596 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 || || |||||||||||||||||||| |||| Sbjct 17595 GGTAATGGTCTTTCCCGTGAGAGTCTTAACAA 17564 Score = 167 bits (184), Expect = 5e-36 Identities = 159/201 (79%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 ||||||||| ||||| | ||| ||||| ||||| || |||||||| ||||| | ||||| Sbjct 17492 ACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAAGG- 17434 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | |||||||| || || ||||| ||||| || | || |||||||||||||||| || Sbjct 17433 TGCGACCATCTTCGAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGGTCAGGAGGAATTC 17374 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | ||||||||||||||||| ||| || || || ||||| || | ||| ||||| | Sbjct 17373 CCTCCTTGTCCTGGATCTTGGATTTGACATTGTCAATGGTATCGCTGGATTCGACCTCAA 17314 Query 211072 GAGTGATCGTCTTTCCCGTGA 211092 ||||||| |||||||| |||| Sbjct 17313 GAGTGATGGTCTTTCCGGTGA 17293 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || ||||||||||| ||||||| ||| || | ||||| |||| |||||| || Sbjct 17978 GTCGATTCCTTTTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCCAACTGCTTACCA 17919 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || |||||||| |||||||| ||||| || | || ||||| || |||||||| ||| Sbjct 17918 GCAAAGATAAGACGTTGTTGATCAGGTGGGATACCCTCCTTATCTTGGATCTTGGACTTC 17859 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || ||||||||||| || |||||||| | |||||| ||||| || ||||| ||| Sbjct 17858 ACATTGTCGATGGTGTCCGATGACTCAACCTCCAAAGTGATTGTCTTCCCAGTGAGGGTC 17799 Query 211098 TTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 17798 TTGACGAAGATTTGCAT 17782 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| | ||| || ||||| || || ||||||| |||||| Sbjct 18231 ACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAGGGT 18172 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 || ||||| |||| |||||| ||||| ||||| | |||||||| ||||| |||| || Sbjct 18171 TCTGCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCC 18112 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||||||||| || || || || || || || || ||| || || | Sbjct 18111 CTCCTTATCCTGGATCTTCGACTTAACATTATCAATAGTATCTGACGATTCTACTTCCAA 18052 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||| || | ||||| ||||| | ||||| Sbjct 18051 TGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 18010 >seq2089 Length=24093 Score = 179 bits (198), Expect = 9e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | || || | ||| ||||||||||| ||||||||||| || || | |||||| Sbjct 11820 ACGGAGACGTAACACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGT 11761 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || ||||| || |||||||| | || ||||||||||| || | ||| Sbjct 11760 GCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATTCC 11701 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || || || ||||||||||| || ||||||||||| Sbjct 11700 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAG 11641 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || |||||||| ||||| || || | |||||| Sbjct 11640 GGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 11599 >seq1994 Length=27662 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||| ||||| | || || | ||| || |||| ||||| || |||||||| Sbjct 3891 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCCTCCAATTGCTTTCCAGCGAAGATC 3950 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | |||||||| || ||||||| ||| ||||||||||||||||| || || || ||| Sbjct 3951 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4010 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 4011 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 4069 >seq1009 Length=94825 Score = 107 bits (118), Expect = 4e-18 Identities = 191/275 (69%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152 |||||||||||||||||| || ||||||||||| ||||| || |||| Sbjct 23295 GTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGT 23236 Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212 ||| | |||||| ||||||| | |||||||| || || || |||||| | Sbjct 23235 CTCGGTTTGAGCTTCGAGAATAGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTGCGACC 23176 Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272 || ||| | |||||||| | |||||| ||||||| ||| ||||| ||||| | Sbjct 23175 CTTGCCTGCCTTCTCGTAACCCTCGTAGAGAGCCTCGAACTCCTCACCATAAACATCTGC 23116 Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCG-TCTTCCTTC-ACTCGT 178330 | || ||| || |||||||| | |||| |||| | ||| |||| ||| ||||| Sbjct 23115 CAAGCCTGGACATTCGTTGGGGCACATGAGAGTCCATTCTCCGTTCTT--TTCAACTCGC 23058 Query 178331 TTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 |||||||| || |||| |||| | ||| ||||| Sbjct 23057 TTCATGAATAGATCAGGAATCCACAAGGCGTAGAA 23023 >seq229 Length=55923 Score = 98.7 bits (108), Expect = 2e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 139810 CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAA 139869 |||||||||||||| | || ||||||||||| || ||||||| | ||||| |||| Sbjct 24503 CCAAAGAAGCACGGTCGTGGTGGACAATCTGCCCTTCGTTTTGCTCGTCTTCGTGAGGAG 24444 Query 139870 AAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAAGAC 139929 ||| | ||||||||| | |||| ||||| || || ||||| ||| |||| || Sbjct 24443 AAGCGTCACAACTACGTTCGAAAGGTTGCCGAATTAGCGGTACAGAATTTCATCACAGCA 24384 Query 139930 AACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981 ||||| || |||||||| | ||||| ||||| || || ||||||| Sbjct 24383 GACAAGGTCAACGTAGCTGGTATTATCTTGGCTGGTTCTGCCGATTTCAAGA 24332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159113326342460