Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2089 122 6e-23 seq2210 107 1e-18 seq1994 84.2 1e-11 >seq2089 Length=24093 Score = 122 bits (134), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||||| || || Sbjct 11599 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 11658 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || || | || || || || Sbjct 11659 GACACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGAATCCCACCTGACCA 11717 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || || ||||| || ||||| ||||| | ||||| | ||| ||||| Sbjct 11718 ACAGCGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGACTACAA 11777 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 ||| ||||| |||||||| | || || || ||| Sbjct 11778 CATCCAAAAGGAGTCCACTCTCCACTTGGTGTTA 11811 >seq2210 Length=20483 Score = 107 bits (118), Expect = 1e-18 Identities = 131/176 (74%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 23633 TCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAA 23691 |||| ||||| || |||||||| || || || |||| || || |||| ||| | ||| Sbjct 17293 TCACCGGAAAGACCATCACTCTTGAGGTCGAATCCAGCGATACCATTGACAATGTCAAAT 17352 Query 23692 CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGC 23751 | || | | ||||| || || | || || || ||||||||||| || || |||||| Sbjct 17353 CCAAGA-TCCAGGACAAGGAGGGAATTCCTCCTGACCAACAGCGTTTGATTTTCGCCGGC 17411 Query 23752 AAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 |||||||| ||||| | ||||| || ||||||||||||| || || ||||| || Sbjct 17412 AAACAACTCGAAGATGGTCGCACCTTGAGCGATTACAACATCCAGAAGGAGTCTAC 17467 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 23623 GTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAA 23682 ||||| || ||||||||||| || || || ||||| ||||| || | ||||| | || Sbjct 17566 GTTAAGACTCTCACGGGAAAGACCATTACCCTCGAGGTTGAATCTTCCGACACCATCGAC 17625 Query 23683 ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATA 23742 | | ||| || ||| ||||| ||||| | || || |||||||| ||||| || Sbjct 17626 AACGTCAAATCGAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAACAACGTTTGATC 17685 Query 23743 TTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAG 23802 || |||||||||||||| || || | || || | |||||||||||| || || ||| Sbjct 17686 TTCGCCGGCAAACAACTCGAGGATGGCCGTACACTCTCCGATTACAACATCCAGAAGGAG 17745 Query 23803 TCCAC 23807 || || Sbjct 17746 TCTAC 17750 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| || || || |||||| | || ||||| || || Sbjct 17782 ATGCAAATCTTCGTCAAGACCCTCACTGGGAAGACAATCACTTTGGAGGTTGAGTCATCG 17841 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | || || || ||| | || || ||||| Sbjct 17842 GACACCATCGACAATGTGAAGTCCAAGA-TCCAAGATAAGGAGGGTATCCCACCTGATCA 17900 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| || || || |||| || | |||||| | |||||||| Sbjct 17901 ACAACGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTTTCGGATTACAA 17960 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||| || || || |||||||| || Sbjct 17961 CATCCAAAAGGAATCGACCTTACATTTGGT 17990 >seq1994 Length=27662 Score = 84.2 bits (92), Expect = 1e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679 ||||| || ||||| ||||| || || ||||| || || || || ||| | ||||| | Sbjct 4069 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATC 4010 Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738 || ||| | || | || | | ||||| || || | || || |||||||| ||||| Sbjct 4009 GACAATGTCAAGTCCAAGA-TCCAGGACAAGGAGGGAATTCCTCCCGATCAACAACGTTT 3951 Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798 || || || || || ||| |||| |||| ||| ||| | ||||||||||| ||||| Sbjct 3950 GATCTTCGCTGGAAAGCAATTGGAGGACGGACGTACTCTCTCAGATTACAACATCCAAAA 3891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337998872842832