Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1009 327 2e-84 seq2055 100 4e-16 >seq1009 Length=94825 Score = 327 bits (362), Expect = 2e-84 Identities = 1314/2036 (65%), Gaps = 51/2036 (3%) Strand=Plus/Minus Query 76812 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 76871 ||||||||||||||||| || || || | ||||| |||| || |||||||| | Sbjct 24263 GTACGTAGATAGTACATTCCGGTCTTCAAACCCAATTTCCAACCAGCAAAATGCATAGAT 24204 Query 76872 GTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATG 76931 || | || ||||||| || ||||| ||||| || ||| ||||||||| Sbjct 24203 GTAATCTTACCCATTGTAGGATCCTTCATGTGAATGTTCATTGATTGAGATTGATCGATA 24144 Query 76932 AAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTT 76991 || || || | |||||| ||||||| | ||| || ||||| |||||||||| || Sbjct 24143 AATGCACCACGATCAGCAGCCATTTGAACAATTGTTCGTTGAGAGATTTCCCAAACGGTC 24084 Query 76992 TTGAAAACTTGTTTGATATCATCTGGAAGGTTTG---TATTTTGAATGGAACCACCATCT 77048 ||| | | ||||| ||| |||||| || | | ||||| ||||| |||||||| Sbjct 24083 TTGTAGAGAGCCTTGATGTCAGCTGGAATATTGGGGATGTTTTGGATGGATCCACCATCA 24024 Query 77049 GATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGG 77108 | || || ||||| || | ||| ||| | | | || | || | || Sbjct 24023 GCAATGATACGGTTCTTCATGTTGTCAGACCAGAGACCCATATCGACAAGGTCTTTGAGA 23964 Query 77109 AGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTG 77168 || |||||||| | ||| |||||||| | | || | ||| | ||| || || | Sbjct 23963 AGCCATGGATTAACGACTTGGAATTCTCCGGCAAGAACACGACGGGAGTAGATGTTTGAG 23904 Query 77169 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATA 77228 || || ||||| | | |||||||| || | |||||| | || |||||| ||||| Sbjct 23903 GTGTAAGGTTCGAAACATTCATTGAAGCCAAGAATTTGGGATGTGCTAGCAGTAGGCATG 23844 Query 77229 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTC 77288 ||||| || | | || | || || ||| |||| | || | | | | Sbjct 23843 GGTGCAACGAGGAGGGAGTTACGGATTCCGTGTTGCTTGATGGATTGCTTCAAGGAGTCC 23784 Query 77289 CAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTA 77348 |||||||| | ||| | |||| |||| |||| | ||| ||||| || ||| || | | Sbjct 23783 CAATCCCACAAATCAGTAGGTGTAACACCCCACATATCATATTGGAGTTCTCCCTT-CGA 23725 Query 77349 GCATAT-GATCCATTATATGTTTCATAAGGTCC---TTCTGTTTCAG-CTAGTTCACAAC 77403 | | || || | ||| || || || || || ||| || || || | || Sbjct 23724 GACTGGAGAGCCTTGATAAGTGTCGTATGGGCCAAGTTCCTTTGCAATCTCG---ACGGA 23668 Query 77404 TCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCT 77462 | || || || ||| || || || |||||||| | | ||||| | |||| ||| Sbjct 23667 TGAGGTC-AAGGCGGCGTGGTAGATAGTCTCGAAAATTTGGATGTTGAGGTGCTTG-GCT 23610 Query 77463 TCAATACTATCAAACGGATAATGTAAAAG--AATAAAGGCATCTGCTAATCCCTGAACTC 77520 || || || ||| | | || || || |||| |||| || | || ||||| | Sbjct 23609 TCTGGGGAGTCGAATGGAAGACG-AAGAGCCAAGAAAG-CATCAGCAAGACCTTGAACAC 23552 Query 77521 CAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAAT 77580 | | | | ||||||||||||| |||| || | ||||||| | ||||| |||| Sbjct 23551 CGACAGCGATAGGTCTATGTCGGAAATTGCTCTTTCTGGCTTCTGCGACTGGATAGTAAT 23492 Query 77581 TAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAA 77640 | ||||| || || || || | ||||||||||| || | ||| || || | || || Sbjct 23491 TGATGTCAATGATCTTGTTCAAGTTTCTAACAACAACCTGAACAACCTCGTGAAGCTTTT 23432 Query 77641 GAAAATCAAATCTTCCATCTATAACAA--AC--ATGTT--CAAAGCTATAGATGCTAGAT 77694 | || ||| | |||| || | | || ||||| |||||| ||||| || | | Sbjct 23431 GGAAGTCATAAGTTCCCTCATTCATGTTGACGAATGTTGGCAAAGCGATAGAAGCCAAGT 23372 Query 77695 TACAAACTGCTACCTCATTAGCGTTGGCA---TATTGTATTATCTCGGTACATAGATTAC 77751 |||| || ||||||| | || ||| || | | || || || || | || Sbjct 23371 TACAGCAAGCAACCTCATCTG-GT--GCAGAGTACTCCACGATTTCTGTGCACAAGTTGG 23315 Query 77752 TACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAA 77811 | | ||||| || || || | |||||||||||| || ||||||| || || |||| Sbjct 23314 AGCTTCGAATAGTACCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAA 23255 Query 77812 GAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAG 77871 | || || ||| | ||||| || | || | ||||| |||||| | ||| | | || Sbjct 23254 GCATGAAAGGATTTCCGGTCTCGGTTTGAGCTTCGAGAATAGAGTACCAAAGCTTTTGAG 23195 Query 77872 CTTTTATCATAGATTTGTATCGCCTCTCT--CTT-TCATATTGA--GTATATAGCCGTTC 77926 | || || || ||| | | | || ||| || || ||| | |||| || Sbjct 23194 CCTTGAT---AGTCTTGCGACCCTTGCCTGCCTTCTCGTAACCCTCGTAGAGAGCC--TC 23140 Query 77927 AAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCA 77986 || || || || ||||||| |||| || || ||||| || |||||||| | | ||| Sbjct 23139 GAACTCCTCACCATAAACATCTGCCAAGCCTGGACATTCGTTGGGGCACATGAGAGTCCA 23080 Query 77987 GTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAG 78046 || || | | | |||||| ||||| || |||||||| ||||| | || || || Sbjct 23079 TTCTCCGTTCTTTTCAACTCGCTTCATGAATAGATCAGGAATCCACAAGGCGTAGAAGAG 23020 Query 78047 ATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAAT 78106 ||| || | | | |||||| || || |||||| ||||| || ||||| | || Sbjct 23019 ATCGCGTGCACGAACTTCTTCCTTACCATGATTCTTACGTAGATCAAGGAACTCGAAAAC 22960 Query 78107 ATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTG 78166 ||| | ||||||||| || || || | || | | | ||||| || || ||||| || || Sbjct 22959 ATCCGCATGCCATGGCTCAAGGTAAACAGCAAAAGCACCAGGACGCTTGTTACCACCTTG 22900 Query 78167 ATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGT 78226 || | ||||||||| ||||| || |||||| | ||| |||| |||||||||||| | Sbjct 22899 GTCAACATATCTGGCAGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTAGAGTT 22840 Query 78227 TCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTAT 78286 |||||| || |||| || || ||| | || || || | |||| | || || Sbjct 22839 TCCATTGGTACCAGCGATGTATGCACCAGTAGCACGGATTCTGTGAATGTTGAGACCAAT 22780 Query 78287 TCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTAT 78346 || || || |||| || || | || || ||||| || ||||| ||||| || || Sbjct 22779 ACCACCAGCATTCTTTGAGATCATGGCACAGATCTTCAAAGTGTCGTAAATACCATCAAT 22720 Query 78347 ACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGC 78406 ||| || ||| |||||| | || || || || | ||| || ||| || || Sbjct 22719 ACTATCCTCCTTCATGTCGATGAGGAAGCACGATGAAAGTTGTGCTTGTGGAGTACCCGC 22660 Query 78407 ATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTC 78466 | || | ||| || || ||||| ||||| | || | || | | || |||||||| Sbjct 22659 AGAGAAGAGTGTTGGGGAGGCATGTGTAAAGTACTTGTTCGACATCAAGTTATATGTTTC 22600 Query 78467 AATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCT 78525 ||||| ||| || || || | ||||| || || || |||||||| | ||| || | Sbjct 22599 GATAGCACTTTCGATATCATCACCG-TGAATACCAACGGCAACACGCATGATCATTTGTT 22541 Query 78526 GAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAA 78585 | || | ||| | ||| || | | | ||||||| ||| | ||||| | Sbjct 22540 GTGGACGTTCTGCAACCTTGCCATCGAGACGTAGAAGGTATGATCGTTCAAGTGTTTTGA 22481 Query 78586 AACCAAAATAGTTGTA--TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATC 78643 | || || || | ||| ||||| |||| || || | |||| |||| || |||| || Sbjct 22480 AGCCGAAGTATTGGTAGTTGAAA--TCTCGGTCATAGACAATAGCAGAGTTGAGTTCCTC 22423 Query 78644 TTTGTATTTGGTAAC-AATATCCATGACAGTAGTTG-AAATAATAGGAGATCGTACACCA 78701 | | | | | || || ||| | ||| ||| ||||||||| | ||| Sbjct 22422 CTCATGTCTCATGACGCATTCGAATG--TTTCCTTGCTAATCATAGGAGATGGCGTGCCA 22365 Query 78702 TTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttttGTT 78761 ||| | || || ||| | ||||||| || |||| ||| |||| || ||| Sbjct 22364 TTTCTTGGGTTTGTATATTGGTATAAATCGCGGATAACATGCGAGAATTGTTTCTTGGTT 22305 Query 78762 TCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATG 78817 | ||||| ||||| || || || || | ||||||||||| |||||||| ||||| Sbjct 22304 TGTTTGTGAAGATTGGAGACTGCAATACGAGCAGCTAGAATGGCATAATCGGGATG 22249 >seq2055 Length=75196 Score = 100 bits (110), Expect = 4e-16 Identities = 224/334 (67%), Gaps = 7/334 (2%) Strand=Plus/Minus Query 48363 GTTTCTATAGCATTAAAGAGAAAGtttttttCA--TTGCTATCTTTAACGTAAGTATCTA 48420 || || |||||||| || || | | |||| | ||||| | || | || || || | Sbjct 73155 GTCTCAATAGCATTGAACAGGTATGTCTTTTGAGCTTGCT--CCTTGATATATGTGTCGA 73098 Query 48421 TTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAAC 48480 | | |||| || |||||||||| || || || || || || || |||||||| | Sbjct 73097 TGAGAAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATGATTTGGAAACCGTAAAAGC 73038 Query 48481 ATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTA 48540 ||| || |||| ||| || || || | |||| |||| |||| ||||| || || | Sbjct 73037 ATCGTGCCTCTGGGATTTGAACTTCGCCGCTGAATCTTTCAACCAAGTTCTCGTTGACAA 72978 Query 48541 TTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAG 48600 |||| || || || || ||||| | ||||| || || || |||| | | Sbjct 72977 TTCCGTCGGATGCTGCGAAGAATGCAAGAACATGGGAGATGAAGTAACGCTCGTCGTCAT 72918 Query 48601 TCAGTTTATT---CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAA 48657 | ||| | || |||||| | | ||| ||||| | ||| | ||||| || ||||| | Sbjct 72917 TGAGTCTGTTGCTCCAGTCGTGAAGATCCTTTGACAAATCGATCTCTTCTGCGGTCCAGA 72858 Query 48658 ATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | ||||||||||| || || ||||| | ||| || Sbjct 72857 AAGATGCCTCTGCCTTCTTGTACATCTGCCAGAT 72824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694646188530560