Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1009 316 3e-81 >seq1009 Length=94825 Score = 316 bits (350), Expect = 3e-81 Identities = 1327/2064 (64%), Gaps = 47/2064 (2%) Strand=Plus/Minus Query 75377 GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 75436 ||||| ||||| || | || || | | ||||||||||||||||| || || || | | Sbjct 24293 GTGAATTGAATAGGTGCCGAGGCAGCCATGGTACGTAGATAGTACATTCCGGTCTTCAAA 24234 Query 75437 CCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATA 75496 |||| |||| || |||||||| ||| | || | ||||| || Sbjct 24233 CCCAATTTCCAACCAGCAAAATGCATAGATGTAATCTTACCCATTGTAGGATCCTTCATG 24174 Query 75497 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 75556 ||||| ||||| || ||| ||||||||| || || || | |||||| ||||||| | | Sbjct 24173 TGAATGTTCATTGATTGAGATTGATCGATAAATGCACCACGATCAGCAGCCATTTGAACA 24114 Query 75557 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGA 75616 || || ||||| |||||||||| || ||| | | ||||| ||| |||||| | Sbjct 24113 ATTGTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATA 24054 Query 75617 TTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTC 75673 || | | ||||| |||||||| ||||||| || || ||||| || | ||| | Sbjct 24053 TTGGGGATGTTTTGGATGGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCAGAC 23994 Query 75674 CACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCA 75733 || | | ||| | || | || || |||||||| | ||| |||||||| Sbjct 23993 CAGAGACCCATATCGACAAGGTCTTTGAGAAGCCATGGATTAACGACTTGGAATTCTCCG 23934 Query 75734 GACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 75793 | | || | || | ||| || || ||| || ||||| | | |||||||| || Sbjct 23933 GCAAGAACACGACGGGAGTAGATGTTTGAGGTGTAAGGTTCGAAACATTCATTGAAGCCA 23874 Query 75794 AAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 75853 | |||||| | || |||||| ||||| ||||| || | | || | || || Sbjct 23873 AGAATTTGGGATGTGCTAGCAGTAGGCATGGGTGCAACGAGGAGGGAGTTACGGATTCCG 23814 Query 75854 TGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCC 75913 ||| |||| | || | | | ||||||||| | ||| | ||| |||| || Sbjct 23813 TGTTGCTTGATGGATTGCTTCAAGGAGTCCCAATCCCACAAATCAGTAGGTGTAACACCC 23754 Query 75914 CAGAGATCGTATTGTAGAATTCCGTTGCTAGCATAT-GATCCATTATATGTTTCGTAAGT 75972 || | ||| ||||| || ||| || | || | || || | ||| || ||||| | Sbjct 23753 CACATATCATATTGGAGTTCTCCCTT-CGAGACTGGAGAGCCTTGATAAGTGTCGTATGG 23695 Query 75973 CCC--GTCCTTTTCAGCTAGTTCG-CAACTCGCCTCTAACGCACCGTAATAAATTGTTTC 76029 || || | ||| || | ||| | | || || || ||| || || || || Sbjct 23694 GCCAAGTTCCTTT--GCAATCTCGACGGATGAGGTC-AAGGCGGCGTGGTAGATAGTCTC 23638 Query 76030 GAAAATCTTCTTATTAAGAT-CTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAG-- 76086 |||||| | | || || | |||| ||||| | || || ||| | | || || Sbjct 23637 GAAAATTTGGATGTTGAGGTGCTTG-GCTTCTGGGGAGTCGAATGGAAGACG-AAGAGCC 23580 Query 76087 AATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146 || ||| ||||| || || || ||||| || | | | ||||||||||||| |||| Sbjct 23579 AAGAAA-GCATCAGCAAGACCTTGAACACCGACAGCGATAGGTCTATGTCGGAAATTGCT 23521 Query 76147 AATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 76206 || ||||||| | || || ||||| || || || || || || | ||||| || Sbjct 23520 CTTTCTGGCTTCTGCGACTGGATAGTAATTGATGTCAATGATCTTGTTCAAGTTTCTAAC 23461 Query 76207 AACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATCACAA--AC 76264 ||| || | ||| || || | || || | || ||| | |||| || ||| || Sbjct 23460 AACAACCTGAACAACCTCGTGAAGCTTTTGGAAGTCATAAGTTCCCTCATTCATGTTGAC 23401 Query 76265 --ATATTA--AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATA 76320 || || | ||| ||||| || | ||||| || ||||||| | | || Sbjct 23400 GAATGTTGGCAAAGCGATAGAAGCCAAGTTACAGCAAGCAACCTCATCTGGTGCAGAGTA 23341 Query 76321 TTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCT 76380 | | || || ||||| | || | ||||| || || || | ||||||||| Sbjct 23340 CTCCACGATTTCTGTGCACAAGTTGGAGCTTCGAATAGTACCGAGGTTCTTTTGGTTGCT 23281 Query 76381 CTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTC 76440 ||| ||||| |||| || || ||||| | || ||| |||| || || | || | ||| Sbjct 23280 CTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTTTGAGCTTC 23221 Query 76441 GATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCT--CTT 76498 || |||||| | ||| | | ||| || || || ||| | ||| || ||| Sbjct 23220 GAGAATAGAGTACCAAAGCTTTTGAGCCTTGAT---AGTCTTGCGACCCTTGCCTGCCTT 23164 Query 76499 -TCATATTGT--GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGA 76555 || || ||| | | || || || || || || ||||||| |||| || ||| Sbjct 23163 CTCGTAACCCTCGTAGAGAGCC--TCGAACTCCTCACCATAAACATCTGCCAAGCCTGGA 23106 Query 76556 CATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGA 76615 ||||| || || ||||| | | ||| || || | | | ||| || ||||| || ||| Sbjct 23105 CATTCGTTGGGGCACATGAGAGTCCATTCTCCGTTCTTTTCAACTCGCTTCATGAATAGA 23046 Query 76616 TCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTC 76675 ||||| ||||| | || || ||||| || | | | |||||| || || |||| Sbjct 23045 TCAGGAATCCACAAGGCGTAGAAGAGATCGCGTGCACGAACTTCTTCCTTACCATGATTC 22986 Query 76676 TTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATA 76735 || ||||| |||||||| | || ||| | ||||||||| || || || | || | | Sbjct 22985 TTACGTAGATCAAGGAACTCGAAAACATCCGCATGCCATGGCTCAAGGTAAACAGCAAAA 22926 Query 76736 ACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTC 76795 |||| || || || ||||| || || || | ||||||||||||||| || |||||| Sbjct 22925 GCACCAGGACGCTTGTTACCACCTTGGTCAACATATCTGGCAGTGTTGTTGAAAACTCGG 22866 Query 76796 AACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCA 76855 | ||| |||| ||| |||||||| | ||||| || |||| || || ||| ||| Sbjct 22865 AGCATAGGAACAATACCGTTAGAGTTTCCATTGGTACCAGCGATGTATGCACCAGTAGCA 22806 Query 76856 CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT 76915 || || | ||| || || || || || || | || ||||| | |||||| Sbjct 22805 CGGATTCTGTGAATGTTGAGACCAATACCACCAGCATTCTTTGAGATCATGGCACAGATC 22746 Query 76916 TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| ||||| || || || || |||||||| ||| |||||| | || || || Sbjct 22745 TTCAAAGTGTCGTAAATACCATCAATACTATCCTCCTTCATGTCGATGAGGAAGCACGAT 22686 Query 76976 GACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCAT 77035 || | ||| || ||| || ||| || | ||| || || ||||| || || | Sbjct 22685 GAAAGTTGTGCTTGTGGAGTACCCGCAGAGAAGAGTGTTGGGGAGGCATGTGTAAAGTAC 22626 Query 77036 TTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCC 77094 || | || | | || |||||||| ||| | ||| ||||| || | ||||| || Sbjct 22625 TTGTTCGACATCAAGTTATATGTTTCGATAGCACTTTCGATATCATCACCG-TGAATACC 22567 Query 77095 TACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAA 77154 || || |||||||| | ||| || || || |||||| || ||| || | | Sbjct 22566 AACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACCTTGCCATCGAGACGTAG 22507 Query 77155 CAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTTTCG 77212 | ||||||| ||| | ||||| || || || || | ||| ||||| |||| || Sbjct 22506 AAGGTATGATCGTTCAAGTGTTTTGAAGCCGAAGTATTGGTAGTTGAAA--TCTCGGTCA 22449 Query 77213 TAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCA---TGACAGTG 77269 || | |||| | || || |||| |||| || | | | || || | | | || Sbjct 22448 TAGACAATAGCAGAGTTGAGTTCCTCCTCATGTCTCATGACGCATTCGAATGTTTCCTTG 22389 Query 77270 GTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAGTCTTCC 77329 | ||| || |||||| | | |||||| | || || ||| | |||| || Sbjct 22388 CT---AATCATAGGAGATGGCGTGCCATTTCTTGGGTTTGTATATTGGTATAAATCGCGG 22332 Query 77330 ATTACGTCGCTA-AATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGC 77388 || || | || | ||| |||| || |||| ||||| ||||| || || || || | ||| Sbjct 22331 ATAACAT-GCGAGAATTGTTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAATACGAGC 22273 Query 77389 AGCTAGAATTGCATAGTCAGGATG 77412 ||||||||| ||||| || ||||| Sbjct 22272 AGCTAGAATGGCATAATCGGGATG 22249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712911193985280