Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2089 136 9e-27 seq2210 129 1e-24 seq1009 89.7 1e-12 >seq2089 Length=24093 Score = 136 bits (150), Expect = 9e-27 Identities = 158/210 (75%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| |||||||||||||| |||| | || | |||||||| | Sbjct 11805 CAAG-TGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCGA 11747 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||||||||| | | ||| ||||| | | |||||| ||||| || || Sbjct 11746 GTTGCTTT--CCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATTCCCTCCTTGTCCTG 11689 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || |||||| | || | | |||| ||| ||| || || || || || ||||| Sbjct 11688 GATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTTTT 11629 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||| ||||| ||||||| |||||| Sbjct 11628 GCCCGTGAGGGTCTTGACGAAGATCTGCAT 11599 >seq2210 Length=20483 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||||||||| | ||||| |||||||| || |||||||||||||||| | || | Sbjct 17771 AGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTACGG 17712 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || ||| ||||||||||| | | || || || | | ||| |||||| Sbjct 17711 CCATCCTCGAGTTGTTTGCCGGCGAAGATCAAACGTTGTTGATCGGGAGGGATGCCTTCC 17652 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||| || |||||| | || | | |||| ||| || || || || ||| Sbjct 17651 TTGTCTTGAATCTTCGATTTGACGTTGTCGATGGTGTCGGAAGATTCAACCTCGAGGGTA 17592 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || || || |||||||||||||| || Sbjct 17591 ATGGTCTTTCCCGTGAGAGTCTTAAC 17566 Score = 100 bits (110), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||||||||| | || ||||||||||| || ||||||||||||||| || || | Sbjct 17488 AGTCTGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAAGGTGCGA 17429 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| |||||||| || | | ||| ||||| | | ||||| ||| Sbjct 17428 CCATCTTCGAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGGTCAGGAGGAATTCCCTCC 17369 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAG 152064 || || || || || ||||||| | || | | | | ||| | || || ||||||| Sbjct 17368 TTGTCCTGGATCTTGGATTTGACATTGTCAATGGTATCGCTGGA--TTCGACCTCAAGAG 17311 Query 152065 TAATAGTTTTGCCCGTGA 152082 | || || || || |||| Sbjct 17310 TGATGGTCTTTCCGGTGA 17293 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| | || || || ||||||||||||||||| | | ||| | ||||| Sbjct 17993 AGGACCAAATGTAAGGTCGATTCCTTTTGGATGTTGTAATCCGAAAGAGTGCGGCCATCC 17934 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || |||||||| | || || || | | ||| || ||||| ||| Sbjct 17933 TCCAACTGCTTACCAGCAAAGATAAGACGTTGTTGATCAGGTGGGATACCCTCCTTATCT 17874 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| | || | | |||| || ||| || || | ||| || || Sbjct 17873 TGGATCTTGGACTTCACATTGTCGATGGTGTCCGATGACTCAACCTCCAAAGTGATTGTC 17814 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||||| ||||| Sbjct 17813 TTCCCAGTGAGGGTCTTGACGAAGATTTGCAT 17782 >seq1009 Length=94825 Score = 89.7 bits (98), Expect = 1e-12 Identities = 192/282 (68%), Gaps = 4/282 (1%) Strand=Plus/Plus Query 115629 TTCTATGCCATTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGG 115688 ||||| ||| | |||| ||||||| || ||||||||||| | |||||| ||| Sbjct 23023 TTCTACGCCTTGTGGATTCCTGATCTATTCATGAAGCGAGTTGAAAAGAACGGAGAATGG 23082 Query 115689 AGCCTCTTTTGTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTGAG 115748 | ||| | || ||||| ||| || || | | |||||||||||| ||||| ||| Sbjct 23083 ACTCTCATGTGCCCCAACGAATGTCCAGGCTTGGCAGATGTTTATGGTGAGGAGTTCGAG 23142 Query 115749 AATCTTTACGAAAGGTACGAGAAAG-AGGGAAGAGCCAAAAGGGTTGTGAAGGCGCAAGA 115807 ||| ||||| | |||||||| | ||| ||| | | || | | | ||||| ||| | Sbjct 23143 GCTCTCTACGAGGGTTACGAGAAGGCAGGCAAGGGTCGCAA-GACTATCAAGGCTCAAAA 23201 Query 115808 CCTTTGGCATCATATCCTTGTCACACAGTCAGAGGTCGGAATGCCCTTTATTGCGTACAA 115867 |||||| | ||| || | | || | ||| ||||| || || || ||||| Sbjct 23202 GCTTTGGTACTCTATTCTCGAAGCTCAAACCGAGACCGGAAATCCTTTCATGCTTTACAA 23261 Query 115868 AGATGCAGTTTGTCGA-AAGAGCAATCAAAAGAATTTCGGTA 115908 ||||||| | | | |||||||| |||||||| |||||| Sbjct 23262 AGATGCA-TGCAACAAGAAGAGCAACCAAAAGAACCTCGGTA 23302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153782304211284