Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2210 181 2e-40 seq2089 181 2e-40 seq1994 134 3e-26 seq2055 114 3e-20 seq518 87.8 4e-12 >seq2210 Length=20483 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| |||||| || ||| |||||||||||||| || | Sbjct 18009 ACCACCACGGAGACGAAGGACCAAATGTAAGGTCGATTCCTTTTGGATGTTGTAATCCGA 17950 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||||||||| | || || || |||||||| | ||||||||| ||| || Sbjct 17949 AAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGTTGATCAGGTGG 17890 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| ||||||||||| | || || | ||||| |||||||| | || || Sbjct 17889 GATACCCTCCTTATCTTGGATCTTGGACTTCACATTGTCGATGGTGTCCGATGACTCAAC 17830 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || || | ||||| ||||| || ||||| Sbjct 17829 CTCCAAAGTGATTGTCTTCCCAGTGAGGGTCTTGACGAAGATTTGCAT 17782 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | || |||| || | || || || ||||||||||| || | Sbjct 17781 ACCACCACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGA 17722 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| |||||||| ||||| ||||||||||||||||| || || Sbjct 17721 GAGTGTACGGCCATCCTCGAGTTGTTTGCCGGCGAAGATCAAACGTTGTTGATCGGGAGG 17662 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||||||||| ||||| | ||| ||| | ||||| ||||| |||| ||| || Sbjct 17661 GATGCCTTCCTTGTCTTGAATCTTCGATTTGACGTTGTCGATGGTGTCGGAAGATTCAAC 17602 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| || || ||||| ||||| | ||||||||| Sbjct 17601 CTCGAGGGTAATGGTCTTTCCCGTGAGAGTCTTAAC 17566 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || || |||||||| ||||| || ||||| || | Sbjct 18237 ACCACCACGAAGACGGAGCACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGA 18178 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | ||||||||| | || || || ||||||||||| |||||||| ||| || Sbjct 18177 AAGGGTTCTGCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGG 18118 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||| || |||||||| | || || |||| ||||| || || | ||| || Sbjct 18117 AATGCCCTCCTTATCCTGGATCTTCGACTTAACATTATCAATAGTATCTGACGATTCTAC 18058 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || || ||||| || ||||| ||||| || || || ||||| Sbjct 18057 TTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 18010 Score = 129 bits (142), Expect = 1e-24 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||||||||| || | || |||| || | || || || ||||||||||| || Sbjct 17498 ACCACCACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCT 17439 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| ||||| ||||| || |||||||| ||||| || |||||||| ||||||||| | Sbjct 17438 CAAG-GTGCGACCATCTTCGAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGGTCAGGAG 17380 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| ||||||||||| |||||||| | ||| || | || || || || | ||||| Sbjct 17379 GAATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCAATGGTATCGCTGGATTCGA 17320 Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075 | || |||||||| ||||| || || Sbjct 17319 CCTCAAGAGTGATGGTCTTTCCGGT 17295 >seq2089 Length=24093 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| || | ||| || ||||||||||||||||| | Sbjct 11826 ACCACCACGGAGACGTAACACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 11767 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||||||||| || ||||| || ||||| |||||||| || ||||||||| || Sbjct 11766 AAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTGG 11707 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| |||||||||| || || Sbjct 11706 GATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAAC 11647 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| || || ||||| | ||||| ||||| |||||||| Sbjct 11646 CTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 11599 >seq1994 Length=27662 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 |||||||||||||| || | || || || || ||||| | ||| || || || |||||| Sbjct 3891 TTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCCTCCAATTGCTTTCCAGCGAAGATC 3950 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 ||||||||||| || ||||| ||||||||||| |||||||| | || || | ||| Sbjct 3951 AAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4010 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | ||||| || || ||||| ||||| ||||| | ||||| ||||| Sbjct 4011 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 4069 >seq2055 Length=75196 Score = 114 bits (126), Expect = 3e-20 Identities = 310/467 (66%), Gaps = 12/467 (3%) Strand=Plus/Plus Query 229950 TTTGCAGAGCGTCTCGTCGCGTGGGTGTGC-GTTGAGGGTATTCTGTTCTCCGGGAGTTT 230008 ||||| | ||||||||||| | | ||| ||||| ||||| | |||||||| || Sbjct 73273 TTTGCTCAACGTCTCGTCGCTTTCGC-TGCTGTTGAAGGTATCTTCTTCTCCGGCTCCTT 73331 Query 230009 CTGCGCCATCTTTTGGCTACGCAACAAGGGCG---TCATGCCCGGGCTCGGTCTGTCGAA 230065 | | ||||||| ||||| ||| ||| | | ||||| |||| || | || || Sbjct 73332 CGCCTCCATCTTCTGGCT---CAAGAAGCGTGGTCTCATGGCCGGACTTACCTTCTCCAA 73388 Query 230066 CGAATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGGTCTTGTATTCGA- 230124 |||| ||||| | | || || ||||| ||| | | |||| || | | ||| | ||| Sbjct 73389 CGAACTCATCTCCCGTGATGAGGGTCTCCAC-ACCGATTTCGC-ATGCCTTCTCTTCTCT 73446 Query 230125 -AGCTAAATAACAAACTACCTTTCGAAACGGTGAAACAAATCGTCACAGAAGTAGTTGCA 230183 | || || || | | | || | || || | || | || |||| |||| | Sbjct 73447 CATCTCAAGCACCGCCCATCCAAGCAAGCCGTTCAAGATGTCATTACCGAAGCCGTTGAA 73506 Query 230184 AATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGAT 230243 | || | || ||| | ||| ||| ||||||| ||| | |||||||| | | Sbjct 73507 ATCGAGCAAGAATTCTTGACCGAGGCTCTTCCTTGTGCTCTCTTGGGCATGAACTCCAAC 73566 Query 230244 CTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAG 230303 |||||| |||||| ||||| ||||| ||||||||| | || |||| | || |||| Sbjct 73567 CTCATGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTCATGGCTTTGGGTAACGAC 73626 Query 230304 AAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAA 230363 ||| | || || || | ||||| |||| || |||||| ||| || | || || Sbjct 73627 AAATTCTACAAGTCTACCAACCCATTCGACTTCATGGAGAACATCTCCTTGGCTGGTAAG 73686 Query 230364 ACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 || ||||||||||| ||| | || | ||||| |||| | ||||||| Sbjct 73687 ACCAACTTCTTCGAGAAGAGAGTTGGTGATTACCAAAAGGCCGGTGT 73733 >seq518 Length=7171 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 316168 TCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATCC 316227 || |||||| |||||||||||||||| ||| |||||||| ||| | || | ||| | Sbjct 2436 TCGTCACCGTTGGCATAACGCCATTGGAGGTATTGATTGGGAGTCTTTTCCAAATGCATC 2495 Query 316228 TCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAA 316287 || | ||| | |||||||| || | ||| ||| ||||| || |||||||| || Sbjct 2496 TCAACGTGCTCCAAAGCGTGTTGCTTGATGTATCCAATACGCAAGTTGGGATGCTTGTAA 2555 Query 316288 ACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTTTTTCCC 316347 ||| ||||| | |||| | ||| || || || | ||||| | ||| ||||| Sbjct 2556 ACGTTACCGGTGGTAGGAACAGTCTCACCAGTAAGAAGCTTAATCAAGGTAGACTTTCCG 2615 Query 316348 GCGCCGTT 316355 || ||||| Sbjct 2616 GCACCGTT 2623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046704276855016