Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2210 138 8e-28 seq2089 132 3e-26 seq1994 120 2e-22 >seq2210 Length=20483 Score = 138 bits (152), Expect = 8e-28 Identities = 166/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||||| | |||| |||||| || |||||| ||||||||||| Sbjct 17787 TTGCATACCACCACGAAGTCTGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTA 17728 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| |||| || | || || || || || ||||| ||||||||||| || ||||| Sbjct 17727 ATCGGAGAGTGTACGGCCATCCTCGAGTTGTTTGCCGGCGAAGATCAAACGTTGTTGATC 17668 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | ||| | |||||||| || |||||| | || | ||| | |||||||||| | Sbjct 17667 GGGAGGGATGCCTTCCTTGTCTTGAATCTTC-GATTTGACGTTGTCGATGGTGTCGGAAG 17609 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 |||| ||||| | ||||| |||||||||||||| ||||| || Sbjct 17608 ATTCAACCTCGAGGGTAATGGTCTTTCCCGTGAGAGTCTTAAC 17566 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||||||||||||||| | || ||| | || |||| |||||| || |||||| Sbjct 17972 TCCTTTTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAG 17913 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | ||| || ||||| | || | ||| ||||| || ||||| ||||| | Sbjct 17912 ATAAGACGTTGTTGATCAGGTGGGATACCCTCCTTATCTTGGATCTTGGACTTCACATTG 17853 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||| | || || ||||||| || || ||||| || ||||||||||| ||| Sbjct 17852 TCGATGGTGTCCGATGACTCAACCTCCAAAGTGATTGTCTTCCCAGTGAGGGTCTTGACG 17793 Query 44327 AAGATTTGCAT 44337 ||||||||||| Sbjct 17792 AAGATTTGCAT 17782 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCG 44185 ||||| ||| | ||||| |||||||| || |||||||| | || || || | || Sbjct 18219 CACCAAGTGCAAGGTGCTTTCCTTTTGAATATTGTAATCCGAAAG--GGTTCTGCCATCC 18162 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| |||||| || ||||||||||| || || ||||| | || | || ||||| ||| Sbjct 18161 TCCAACTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCCTCCTTATCC 18102 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 |||||| ||| | | | || || || | ||||| || |||| ||||| ||| Sbjct 18101 TGGATCTTCGACTTAACATTATCAATAGTATCTGACGATTCTACTTCCAATGTAATGGTC 18042 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || | |||||| || ||||||||||| Sbjct 18041 TTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 18010 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||||| | |||| ||| || || |||||| ||||||||||| Sbjct 17504 TTGCATACCACCACGAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTA 17445 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 |||| | || || || | || || || || || ||||| || ||||||||||| || | Sbjct 17444 ATCGCTCAAGGTG-CGACCATCTTCGAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGGT 17386 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGC 44280 | | ||| | || ||||| ||| ||||| || || ||| | ||||| ||| Sbjct 17385 CAGGAGGAATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGT--CAATGGTATCGCT 17328 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGA 44315 |||||| ||||| | || || |||||||| |||| Sbjct 17327 GGATTCGACCTCAAGAGTGATGGTCTTTCCGGTGA 17293 >seq2089 Length=24093 Score = 132 bits (146), Expect = 3e-26 Identities = 160/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 ||||||| ||| || ||| |||||||||||||||||| |||| || ||| | || Sbjct 11810 AACACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCT 11751 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 || || ||||| ||||| |||||||| ||||| || || | || | || ||||| ||| Sbjct 11750 TCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATTCCCTCCTTGTCC 11691 Query 44246 GTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 ||||| ||| || ||| | |||||||| | || || ||||| | || || | Sbjct 11690 TGGATCTTGGACTTGACATTGT--CGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGG 11633 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 | || |||||||||||||| |||||||| ||||||| Sbjct 11632 TTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGA 11597 >seq1994 Length=27662 Score = 120 bits (132), Expect = 2e-22 Identities = 138/184 (75%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 ||||||||||||||||||| | ||| || |||| |||| ||||| || || |||| Sbjct 3889 CCTTTTGGATGTTGTAATCTGAGAGAGTACGTCCGTCCTCCAATTGCTTTCCAGCGAAGA 3948 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||||||| || ||||| | ||| | || ||||| ||| ||||| ||| || ||| Sbjct 3949 TCAAACGTTGTTGATCGGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 4008 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||||| ||| || ||||| | || || ||||| ||||| |||||||| || Sbjct 4009 --CGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGAC 4066 Query 44326 GAAG 44329 |||| Sbjct 4067 GAAG 4070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359978975254668